Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
  comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK
Testing examples for package 'graphics'
  comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK
Testing examples for package 'stats'
  comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... OK
Testing examples for package 'datasets'
  comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
Testing examples for package 'grid'
  comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
  comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
  comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
Testing examples for package 'parallel'
running strict specific tests
running code in '../../../R-3.4-branch/tests/eval-etc.R' ... OK
  comparing 'eval-etc.Rout' to '../../../R-3.4-branch/tests/eval-etc.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/simple-true.R' ... OK
  comparing 'simple-true.Rout' to '../../../R-3.4-branch/tests/simple-true.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/arith-true.R' ... OK
  comparing 'arith-true.Rout' to '../../../R-3.4-branch/tests/arith-true.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/arith.R' ... OK
  comparing 'arith.Rout' to '../../../R-3.4-branch/tests/arith.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/lm-tests.R' ... OK
  comparing 'lm-tests.Rout' to '../../../R-3.4-branch/tests/lm-tests.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/ok-errors.R' ... OK
  comparing 'ok-errors.Rout' to '../../../R-3.4-branch/tests/ok-errors.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/method-dispatch.R' ... OK
  comparing 'method-dispatch.Rout' to '../../../R-3.4-branch/tests/method-dispatch.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/any-all.R' ... OK
  comparing 'any-all.Rout' to '../../../R-3.4-branch/tests/any-all.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/d-p-q-r-tests.R' ... OK
  comparing 'd-p-q-r-tests.Rout' to '../../../R-3.4-branch/tests/d-p-q-r-tests.Rout.save' ... OK
running sloppy specific tests
running code in '../../../R-3.4-branch/tests/complex.R' ... OK
  comparing 'complex.Rout' to '../../../R-3.4-branch/tests/complex.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/print-tests.R' ... OK
  comparing 'print-tests.Rout' to '../../../R-3.4-branch/tests/print-tests.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/lapack.R' ... OK
  comparing 'lapack.Rout' to '../../../R-3.4-branch/tests/lapack.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/datasets.R' ... OK
  comparing 'datasets.Rout' to '../../../R-3.4-branch/tests/datasets.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/datetime.R' ... OK
  comparing 'datetime.Rout' to '../../../R-3.4-branch/tests/datetime.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/iec60559.R' ... OK
  comparing 'iec60559.Rout' to '../../../R-3.4-branch/tests/iec60559.Rout.save' ... OK
running regression tests ...
running code in '../../../R-3.4-branch/tests/array-subset.R' ... OK
running code in '../../../R-3.4-branch/tests/reg-tests-1a.R' ... OK
running code in '../../../R-3.4-branch/tests/reg-tests-1b.R' ... OK
running code in '../../../R-3.4-branch/tests/reg-tests-1c.R' ... OK
running code in '../../../R-3.4-branch/tests/reg-tests-1d.R' ... OK
running code in '../../../R-3.4-branch/tests/reg-tests-2.R' ... OK
  comparing 'reg-tests-2.Rout' to '../../../R-3.4-branch/tests/reg-tests-2.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/reg-examples1.R' ... OK
running code in '../../../R-3.4-branch/tests/reg-examples2.R' ... OK
running code in '../../../R-3.4-branch/tests/reg-packages.R' ... OK
running code in '../../../R-3.4-branch/tests/p-qbeta-strict-tst.R' ... OK
running code in '../../../R-3.4-branch/tests/r-strict-tst.R' ... OK
running code in '../../../R-3.4-branch/tests/reg-IO.R' ... OK
  comparing 'reg-IO.Rout' to '../../../R-3.4-branch/tests/reg-IO.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/reg-IO2.R' ... OK
  comparing 'reg-IO2.Rout' to '../../../R-3.4-branch/tests/reg-IO2.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/reg-plot.R' ... OK
  comparing 'reg-plot.pdf' to '../../../R-3.4-branch/tests/reg-plot.pdf.save' ... OK
running code in '../../../R-3.4-branch/tests/reg-S4-examples.R' ... OK
running code in '../../../R-3.4-branch/tests/reg-BLAS.R' ... OK
running code in '../../../R-3.4-branch/tests/reg-tests-3.R' ... OK
  comparing 'reg-tests-3.Rout' to '../../../R-3.4-branch/tests/reg-tests-3.Rout.save' ... OK
running code in '../../../R-3.4-branch/tests/reg-examples3.R' ... OK
  comparing 'reg-examples3.Rout' to '../../../R-3.4-branch/tests/reg-examples3.Rout.save' ...326c326
< Achieved convergence tolerance: 9.33e-07
---
> Achieved convergence tolerance: 9.32e-07
 OK
running tests of plotting Latin-1
  expect failure or some differences if not in a Latin-1 or UTF-8 locale
running code in '../../../R-3.4-branch/tests/reg-plot-latin1.R' ... FAILED
running code in '../../../R-3.4-branch/tests/reg-S4.R' ... OK
  comparing 'reg-S4.Rout' to '../../../R-3.4-branch/tests/reg-S4.Rout.save' ... OK
running tests of Internet functions
running code in '../../../R-3.4-branch/tests/internet.R' ... OK
  comparing 'internet.Rout' to '../../../R-3.4-branch/tests/internet.Rout.save' ... OK

[[system return code 0x0]]

checking build system type... x86_64-apple-darwin15.6.0
checking host system type... x86_64-apple-darwin15.6.0
loading site script '../../R-3.4-branch/config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... no
checking for working aclocal... missing
checking for working autoconf... missing
checking for working automake... missing
checking for working autoheader... missing
checking whether ln -s works... yes
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /usr/bin/sed
checking for which... /usr/bin/which
checking for less... /usr/bin/less
checking for gtar... no
checking for gnutar... no
checking for tar... /usr/bin/tar
checking for tex... /Library/TeX/texbin/tex
checking for pdftex... /Library/TeX/texbin/pdftex
checking for pdflatex... /Library/TeX/texbin/pdflatex
checking for makeindex... /Library/TeX/texbin/makeindex
checking for texi2any... /usr/local/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for ginstall-info... no
checking for install-info... /usr/local/bin/install-info
checking for texi2dvi... /usr/local/bin/texi2dvi
checking for kpsewhich... /Library/TeX/texbin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /usr/bin/gzip
checking for bzip2... /usr/bin/bzip2
checking for firefox... no
checking for mozilla... no
checking for galeon... no
checking for opera... no
checking for xdg-open... no
checking for kfmclient... no
checking for gnome-moz-remote... no
checking for open... /usr/bin/open
using default browser ... /usr/bin/open
checking for acroread... no
checking for acroread4... no
checking for xdg-open... no
checking for evince... no
checking for xpdf... no
checking for gv... no
checking for gnome-gv... no
checking for ggv... no
checking for okular... no
checking for kpdf... no
checking for open... /usr/bin/open
checking for notangle... false
checking for realpath... false
checking for pkg-config... /usr/local/bin/pkg-config
checking for gcc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ISO C89... none needed
checking how to run the C preprocessor... clang -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking whether clang needs -traditional... 
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
no
checking for ANSI C header files... 
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking how to run the C preprocessor... clang -E
checking for f95... no
checking for fort... no
checking for xlf95... no
checking for ifort... no
checking for ifc... no
checking for efc... no
checking for pgf95... no
checking for lf95... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ accepts -g... yes
checking whether clang++ -Wall -g -O2 can compile C++ code... yes
checking how to run the C++ preprocessor... clang++ -E
checking whether __attribute__((visibility())) is supported... no
checking whether clang accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking whether we are using the GNU Objective C compiler... yes
checking whether clang accepts -g... yes
checking for Objective C++ compiler... trying some possibilities
checking whether clang++ can compile ObjC++... yes
clang++
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by clang... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 196608
checking how to convert x86_64-apple-darwin15.6.0 file names to x86_64-apple-darwin15.6.0 format... func_convert_file_noop
checking how to convert x86_64-apple-darwin15.6.0 file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... ranlib
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking command to parse /usr/bin/nm -B output from clang object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for -force_load linker flag... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if clang supports -fno-rtti -fno-exceptions... yes
checking for clang option to produce PIC... -fno-common -DPIC
checking if clang PIC flag -fno-common -DPIC works... yes
checking if clang static flag -static works... no
checking if clang supports -c -o file.o... yes
checking if clang supports -c -o file.o... (cached) yes
checking whether the clang linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin15.6.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... clang++ -E
checking for ld used by clang++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... no
checking whether the clang++ linker (/usr/bin/ld) supports shared libraries... yes
checking for clang++ option to produce PIC... -fno-common -DPIC
checking if clang++ PIC flag -fno-common -DPIC works... yes
checking if clang++ static flag -static works... no
checking if clang++ supports -c -o file.o... yes
checking if clang++ supports -c -o file.o... (cached) yes
checking whether the clang++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin15.6.0 dyld
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fno-common
checking if gfortran PIC flag -fno-common works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin15.6.0 dyld
checking how to hardcode library paths into programs... immediate
checking for sin in -lm... yes
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking whether rl_callback_sigcleanup exists and is declared... no
checking whether rl_completion_matches exists and is declared... yes
checking whether rl_resize_terminal exists and is declared... yes
checking whether rl_sort_completion_matches exists and is declared... no
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for dlfcn.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking glob.h usability... yes
checking glob.h presence... yes
checking for glob.h... yes
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking utime.h usability... yes
checking utime.h presence... yes
checking for utime.h... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking elf.h usability... no
checking elf.h presence... no
checking for elf.h... no
checking features.h usability... no
checking features.h presence... no
checking for features.h... no
checking floatingpoint.h usability... no
checking floatingpoint.h presence... no
checking for floatingpoint.h... no
checking langinfo.h usability... yes
checking langinfo.h presence... yes
checking for langinfo.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking stdalign.h usability... yes
checking stdalign.h presence... yes
checking for stdalign.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... no
checking return type of signal handlers... void
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for clang option to accept ISO C99... none needed
checking for clang option to accept ISO Standard C... (cached) none needed
checking for inline... inline
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of double... 8
checking size of size_t... 8
checking size of long double... 16
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether clang supports -c -o FILE.lo... yes
checking for clang option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/local/lib -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0/../../.. -lgfortran -lquadmath -lm
checking how to get verbose linking output from clang... -v
checking for C libraries of clang...  -lto_library -L/usr/local/lib -lSystem /usr/local/clang4/bin/../lib/clang/4.0.0/lib/darwin/libclang_rt.osx.a
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and clang agree on int and double... yes
checking whether gfortran and clang agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether clang++ accepts -M for generating dependencies... yes
checking for clang++ option to support OpenMP... -fopenmp
checking whether we can compute ObjC Make dependencies... yes, using clang -MM
checking for ObjC runtime library... -lobjc
checking for ObjC runtime style... next
checking whether clang accepts -fobjc-exceptions... yes
checking for cached Foundation settings... no
checking whether default Foundation framework works... no
checking whether -framework Foundation works... yes
checking for working Foundation implementation... yes
checking whether C runtime needs -D__NO_MATH_INLINES... no
checking for xmkmf... no
checking whether linker supports dynamic lookup... yes
checking whether clang++  supports C++98 features by default... yes
checking whether clang++  supports C++11 features by default... no
checking whether clang++  supports C++11 features with -std=gnu++11... yes
checking whether clang++  supports C++14 features by default... no
checking whether clang++  supports C++14 features with -std=gnu++14... yes
checking whether clang++  supports C++17 features by default... no
checking whether clang++  supports C++17 features with -std=gnu++17... no
checking whether clang++  supports C++17 features with -std=gnu++1z... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking sunmath.h usability... no
checking sunmath.h presence... no
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... no
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for __cospi... yes
checking for __sinpi... yes
checking for __tanpi... yes
checking for fseeko... yes
checking for ftello... yes
checking for matherr... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether getline exists and is declared... yes
checking whether select exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... no
checking whether sched_getaffinity exists and is declared... no
checking whether utime exists and is declared... yes
checking whether utimensat exists and is declared... no
checking for clock_gettime in -lrt... no
checking whether clock_gettime exists and is declared... no
checking whether timespec_get exists and is declared... no
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... no
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for dladdr... yes
checking for dlsym... yes
checking whether dladdr is declared... yes
checking whether dlsym is declared... yes
checking whether RTLD_DEFAULT is declared... yes
checking whether RTLD_NEXT is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... no
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for working ctanh... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... in libiconv
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking for iconvlist... yes
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... no
checking for ucol_open in -licucore... yes
checking for X... libraries /opt/X11/lib, headers /usr/X11/include
checking whether -R must be followed by a space... neither works
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... yes
checking X11/Xmu/Atoms.h presence... yes
checking for X11/Xmu/Atoms.h... yes
checking for XmuInternAtom in -lXmu... yes
checking whether pkg-config knows about cairo and pango... no
checking whether pkg-config knows about cairo... yes
checking whether cairo is >= 1.2 and works... yes
checking for CFStringGetSystemEncoding in CoreFoundation framework... -framework CoreFoundation
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/local/lib/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/local/lib/tkConfig.sh
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking tk.h usability... yes
checking tk.h presence... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support suffices... yes
checking mmap support for zlib... yes
checking for BZ2_bzlibVersion in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support suffices... yes
checking for lzma_version_number in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for pcre_fullinfo in -lpcre... yes
checking pcre.h usability... yes
checking pcre.h presence... yes
checking for pcre.h... yes
checking pcre/pcre.h usability... no
checking pcre/pcre.h presence... no
checking for pcre/pcre.h... no
checking if PCRE version >= 8.20, < 10.0 and has UTF-8 support... yes
checking if PCRE version >= 8.32... yes
checking whether PCRE support suffices... yes
checking for curl-config... /usr/bin/curl-config
checking libcurl version ... 7.43.0
checking curl/curl.h usability... yes
checking curl/curl.h presence... yes
checking for curl/curl.h... yes
checking if libcurl is version 7 and >= 7.22.0... yes
checking if libcurl supports https... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking tiffio.h usability... yes
checking tiffio.h presence... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for sys/time.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for struct stat.st_atim.tv_nsec... no
checking for struct stat.st_atimespec.tv_nsec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... yes
checking for lpr... lpr
checking for paperconf... false
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fno-common
checking if gfortran PIC flag -fno-common works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin15.6.0 dyld
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... -fopenmp
checking for recommended packages... yes
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a thread-safe mkdir -p... ../../R-3.4-branch/tools/install-sh -c -d
checking whether we are using the GNU C Library 2 or newer... no
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... no
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by clang... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... no
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... no
checking for multithread API to use... none
checking argz.h usability... no
checking argz.h presence... no
checking for argz.h... no
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) no
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... no
checking for argz_stringify... no
checking for argz_next... no
checking for __fsetlocking... no
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... no
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... no
checking for bison... bison
checking version of bison... 2.3, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... no
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... yes
checking for CFLocaleCopyCurrent... yes
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) yes
checking for CFLocaleCopyCurrent... (cached) yes
checking whether included gettext is requested... no
checking for GNU gettext in libc... no
checking for GNU gettext in libintl... no
checking whether to use NLS... yes
checking where the gettext function comes from... included intl directory
Finished configuring src/extra/intl directory

checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/sh
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
config.status: creating src/library/datasets/Makefile
config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/graphics/src/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/f77_f2c
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for x86_64-apple-darwin15.6.0

  Source directory:          ../../R-3.4-branch
  Installation directory:    /Library/Frameworks

  C compiler:                clang  -Wall -g -O2
  Fortran 77 compiler:       gfortran  -g -O2

  Default C++ compiler:      clang++   -Wall -g -O2
  C++98 compiler:            clang++  -Wall -g -O2
  C++11 compiler:            clang++ -std=gnu++11 -Wall -g -O2
  C++14 compiler:            clang++ -std=gnu++14 -Wall -g -O2
  C++17 compiler:            clang++ -std=gnu++1z -Wall -g -O2
  Fortran 90/95 compiler:    gfortran -Wall -g -O2
  Obj-C compiler:	     clang -Wall -g -O2 -fobjc-exceptions

  Interfaces supported:      X11, aqua, tcltk
  External libraries:        readline, curl
  Additional capabilities:   PNG, JPEG, TIFF, NLS, cairo, ICU
  Options enabled:           framework, shared BLAS, R profiling, memory profiling

  Capabilities skipped:      
  Options not enabled:       

  Recommended packages:      yes


[[system return code 0x0]]

creating RESOURCES
creating FAQ
creating doc/html/resources.html
make[1]: Nothing to be done for `R'.
make[1]: Nothing to be done for `R'.
make[2]: Nothing to be done for `R'.
mkdir ../share/R
mkdir ../share/dictionaries
mkdir ../share/encodings
mkdir ../share/java
mkdir ../share/licenses
mkdir ../share/make
mkdir ../share/Rd
mkdir ../share/Rd/macros
mkdir ../share/sh
mkdir ../share/texmf
mkdir ../share/texmf/bibtex
mkdir ../share/texmf/bibtex/bib
mkdir ../share/texmf/bibtex/bst
mkdir ../share/texmf/tex
mkdir ../share/texmf/tex/latex
creating src/scripts/R.fe
mkdir ../../bin
mkdir ../../include
mkdir ../../../include/R_ext
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../../R-3.4-branch/src/extra/blas/blas.f -o blas.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../../R-3.4-branch/src/extra/blas/cmplxblas.f -o cmplxblas.o
making localtime.d from ../../../../../R-3.4-branch/src/extra/tzone/localtime.c
making strftime.d from ../../../../../R-3.4-branch/src/extra/tzone/strftime.c
making regcomp.d from ../../../../../R-3.4-branch/src/extra/tre/regcomp.c
making regerror.d from ../../../../../R-3.4-branch/src/extra/tre/regerror.c
making regexec.d from ../../../../../R-3.4-branch/src/extra/tre/regexec.c
making bindtextdom.d from ../../../../../R-3.4-branch/src/extra/intl/bindtextdom.c
making tre-ast.d from ../../../../../R-3.4-branch/src/extra/tre/tre-ast.c
making dcgettext.d from ../../../../../R-3.4-branch/src/extra/intl/dcgettext.c
making tre-compile.d from ../../../../../R-3.4-branch/src/extra/tre/tre-compile.c
making tre-match-approx.d from ../../../../../R-3.4-branch/src/extra/tre/tre-match-approx.c
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/tzone -I../../../../../R-3.4-branch/src/main -I/usr/local/include -DHAVE_CONFIG_H  -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tzone/localtime.c -o localtime.o
making dgettext.d from ../../../../../R-3.4-branch/src/extra/intl/dgettext.c
making tre-match-backtrack.d from ../../../../../R-3.4-branch/src/extra/tre/tre-match-backtrack.c
making gettext.d from ../../../../../R-3.4-branch/src/extra/intl/gettext.c
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/tzone -I../../../../../R-3.4-branch/src/main -I/usr/local/include -DHAVE_CONFIG_H  -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tzone/strftime.c -o strftime.o
making tre-match-parallel.d from ../../../../../R-3.4-branch/src/extra/tre/tre-match-parallel.c
making tre-mem.d from ../../../../../R-3.4-branch/src/extra/tre/tre-mem.c
making finddomain.d from ../../../../../R-3.4-branch/src/extra/intl/finddomain.c
making tre-parse.d from ../../../../../R-3.4-branch/src/extra/tre/tre-parse.c
making loadmsgcat.d from ../../../../../R-3.4-branch/src/extra/intl/loadmsgcat.c
making textdomain.d from ../../../../../R-3.4-branch/src/extra/intl/textdomain.c
making l10nflist.d from ../../../../../R-3.4-branch/src/extra/intl/l10nflist.c
making tre-stack.d from ../../../../../R-3.4-branch/src/extra/tre/tre-stack.c
making xmalloc.d from ../../../../../R-3.4-branch/src/extra/tre/xmalloc.c
making explodename.d from ../../../../../R-3.4-branch/src/extra/intl/explodename.c
making dcigettext.d from ../../../../../R-3.4-branch/src/extra/intl/dcigettext.c
making dcngettext.d from ../../../../../R-3.4-branch/src/extra/intl/dcngettext.c
clang -I../../../../../R-3.4-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tre/regcomp.c -o regcomp.o
making dngettext.d from ../../../../../R-3.4-branch/src/extra/intl/dngettext.c
making ngettext.d from ../../../../../R-3.4-branch/src/extra/intl/ngettext.c
making plural.d from ../../../../../R-3.4-branch/src/extra/intl/plural.c
making plural-exp.d from ../../../../../R-3.4-branch/src/extra/intl/plural-exp.c
making langprefs.d from ../../../../../R-3.4-branch/src/extra/intl/langprefs.c
clang -I../../../../../R-3.4-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tre/regerror.c -o regerror.o
making localcharset.d from ../../../../../R-3.4-branch/src/extra/intl/localcharset.c
clang -I../../../../../R-3.4-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tre/regexec.c -o regexec.o
clang -I../../../../../R-3.4-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tre/tre-ast.c -o tre-ast.o
clang -I../../../../../R-3.4-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tre/tre-compile.c -o tre-compile.o
making localename.d from ../../../../../R-3.4-branch/src/extra/intl/localename.c
making printf.d from ../../../../../R-3.4-branch/src/extra/intl/printf.c
clang -I../../../../../R-3.4-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tre/tre-match-approx.c -o tre-match-approx.o
making osdep.d from ../../../../../R-3.4-branch/src/extra/intl/osdep.c
clang -I../../../../../R-3.4-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tre/tre-match-backtrack.c -o tre-match-backtrack.o
clang -I../../../../../R-3.4-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tre/tre-match-parallel.c -o tre-match-parallel.o
making intl-compat.d from ../../../../../R-3.4-branch/src/extra/intl/intl-compat.c
making hash-string.d from ../../../../../R-3.4-branch/src/extra/intl/hash-string.c
making lock.d from ../../../../../R-3.4-branch/src/extra/intl/lock.c
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/bindtextdom.c -o bindtextdom.o
ar -cr libtz.a localtime.o strftime.o
clang -I../../../../../R-3.4-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tre/tre-mem.c -o tre-mem.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/dcgettext.c -o dcgettext.o
clang -I../../../../../R-3.4-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tre/tre-parse.c -o tre-parse.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/dgettext.c -o dgettext.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/gettext.c -o gettext.o
clang -I../../../../../R-3.4-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tre/tre-stack.c -o tre-stack.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/finddomain.c -o finddomain.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/loadmsgcat.c -o loadmsgcat.o
clang -I../../../../../R-3.4-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/tre/xmalloc.c -o xmalloc.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/textdomain.c -o textdomain.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/l10nflist.c -o l10nflist.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/explodename.c -o explodename.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/dcigettext.c -o dcigettext.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/dcngettext.c -o dcngettext.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/dngettext.c -o dngettext.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/ngettext.c -o ngettext.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/plural.c -o plural.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/plural-exp.c -o plural-exp.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/langprefs.c -o langprefs.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/localcharset.c -o localcharset.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/localename.c -o localename.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/printf.c -o printf.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/osdep.c -o osdep.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/intl-compat.c -o intl-compat.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/hash-string.c -o hash-string.o
ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I../../../../../R-3.4-branch/src/extra/intl -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.4-branch/src/extra/intl/lock.c -o lock.o
ranlib libtre.a
ar -cr libintl.a bindtextdom.o dcgettext.o dgettext.o gettext.o finddomain.o loadmsgcat.o textdomain.o l10nflist.o explodename.o dcigettext.o dcngettext.o dngettext.o ngettext.o plural.o plural-exp.o langprefs.o localcharset.o localename.o printf.o osdep.o intl-compat.o hash-string.o lock.o

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(printf.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(osdep.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(lock.o) has no symbols
ranlib libintl.a

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(printf.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(osdep.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(lock.o) has no symbols
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -o libRblas.dylib blas.o  cmplxblas.o -install_name libRblas.dylib -headerpad_max_install_names -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm
mkdir /Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib
making integrate.d from ../../../../R-3.4-branch/src/appl/integrate.c
making interv.d from ../../../../R-3.4-branch/src/appl/interv.c
making optim.d from ../../../../R-3.4-branch/src/appl/optim.c
making maxcol.d from ../../../../R-3.4-branch/src/appl/maxcol.c
making pretty.d from ../../../../R-3.4-branch/src/appl/pretty.c
making uncmin.d from ../../../../R-3.4-branch/src/appl/uncmin.c
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/appl/integrate.c -o integrate.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/appl/interv.c -o interv.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/appl/maxcol.c -o maxcol.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/appl/optim.c -o optim.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/appl/pretty.c -o pretty.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/appl/uncmin.c -o uncmin.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dchdc.f -o dchdc.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dpbfa.f -o dpbfa.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dpbsl.f -o dpbsl.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dpoco.f -o dpoco.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dpodi.f -o dpodi.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dpofa.f -o dpofa.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dposl.f -o dposl.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dqrdc.f -o dqrdc.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dqrdc2.f -o dqrdc2.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dqrls.f -o dqrls.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dqrsl.f -o dqrsl.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dqrutl.f -o dqrutl.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dsvdc.f -o dsvdc.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dtrco.f -o dtrco.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/appl/dtrsl.f -o dtrsl.o
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
ranlib libappl.a
making mlutils.d from ../../../../R-3.4-branch/src/nmath/mlutils.c
making d1mach.d from ../../../../R-3.4-branch/src/nmath/d1mach.c
making fmax2.d from ../../../../R-3.4-branch/src/nmath/fmax2.c
making i1mach.d from ../../../../R-3.4-branch/src/nmath/i1mach.c
making fmin2.d from ../../../../R-3.4-branch/src/nmath/fmin2.c
making fround.d from ../../../../R-3.4-branch/src/nmath/fround.c
making fprec.d from ../../../../R-3.4-branch/src/nmath/fprec.c
making ftrunc.d from ../../../../R-3.4-branch/src/nmath/ftrunc.c
making sign.d from ../../../../R-3.4-branch/src/nmath/sign.c
making fsign.d from ../../../../R-3.4-branch/src/nmath/fsign.c
making imax2.d from ../../../../R-3.4-branch/src/nmath/imax2.c
making chebyshev.d from ../../../../R-3.4-branch/src/nmath/chebyshev.c
making imin2.d from ../../../../R-3.4-branch/src/nmath/imin2.c
making log1p.d from ../../../../R-3.4-branch/src/nmath/log1p.c
making expm1.d from ../../../../R-3.4-branch/src/nmath/expm1.c
making lgammacor.d from ../../../../R-3.4-branch/src/nmath/lgammacor.c
making gammalims.d from ../../../../R-3.4-branch/src/nmath/gammalims.c
making stirlerr.d from ../../../../R-3.4-branch/src/nmath/stirlerr.c
making gamma.d from ../../../../R-3.4-branch/src/nmath/gamma.c
making bd0.d from ../../../../R-3.4-branch/src/nmath/bd0.c
making lgamma.d from ../../../../R-3.4-branch/src/nmath/lgamma.c
making gamma_cody.d from ../../../../R-3.4-branch/src/nmath/gamma_cody.c
making beta.d from ../../../../R-3.4-branch/src/nmath/beta.c
making lbeta.d from ../../../../R-3.4-branch/src/nmath/lbeta.c
making polygamma.d from ../../../../R-3.4-branch/src/nmath/polygamma.c
making cospi.d from ../../../../R-3.4-branch/src/nmath/cospi.c
making bessel_i.d from ../../../../R-3.4-branch/src/nmath/bessel_i.c
making bessel_j.d from ../../../../R-3.4-branch/src/nmath/bessel_j.c
making bessel_y.d from ../../../../R-3.4-branch/src/nmath/bessel_y.c
making bessel_k.d from ../../../../R-3.4-branch/src/nmath/bessel_k.c
making snorm.d from ../../../../R-3.4-branch/src/nmath/snorm.c
making choose.d from ../../../../R-3.4-branch/src/nmath/choose.c
making sexp.d from ../../../../R-3.4-branch/src/nmath/sexp.c
making dgamma.d from ../../../../R-3.4-branch/src/nmath/dgamma.c
making pgamma.d from ../../../../R-3.4-branch/src/nmath/pgamma.c
making qgamma.d from ../../../../R-3.4-branch/src/nmath/qgamma.c
making rgamma.d from ../../../../R-3.4-branch/src/nmath/rgamma.c
making dbeta.d from ../../../../R-3.4-branch/src/nmath/dbeta.c
making pbeta.d from ../../../../R-3.4-branch/src/nmath/pbeta.c
making qbeta.d from ../../../../R-3.4-branch/src/nmath/qbeta.c
making rbeta.d from ../../../../R-3.4-branch/src/nmath/rbeta.c
making dunif.d from ../../../../R-3.4-branch/src/nmath/dunif.c
making punif.d from ../../../../R-3.4-branch/src/nmath/punif.c
making qunif.d from ../../../../R-3.4-branch/src/nmath/qunif.c
making runif.d from ../../../../R-3.4-branch/src/nmath/runif.c
making dnorm.d from ../../../../R-3.4-branch/src/nmath/dnorm.c
making pnorm.d from ../../../../R-3.4-branch/src/nmath/pnorm.c
making qnorm.d from ../../../../R-3.4-branch/src/nmath/qnorm.c
making rnorm.d from ../../../../R-3.4-branch/src/nmath/rnorm.c
making dlnorm.d from ../../../../R-3.4-branch/src/nmath/dlnorm.c
making plnorm.d from ../../../../R-3.4-branch/src/nmath/plnorm.c
making qlnorm.d from ../../../../R-3.4-branch/src/nmath/qlnorm.c
making rlnorm.d from ../../../../R-3.4-branch/src/nmath/rlnorm.c
making df.d from ../../../../R-3.4-branch/src/nmath/df.c
making pf.d from ../../../../R-3.4-branch/src/nmath/pf.c
making qf.d from ../../../../R-3.4-branch/src/nmath/qf.c
making rf.d from ../../../../R-3.4-branch/src/nmath/rf.c
making dnf.d from ../../../../R-3.4-branch/src/nmath/dnf.c
making dt.d from ../../../../R-3.4-branch/src/nmath/dt.c
making pt.d from ../../../../R-3.4-branch/src/nmath/pt.c
making qt.d from ../../../../R-3.4-branch/src/nmath/qt.c
making dnt.d from ../../../../R-3.4-branch/src/nmath/dnt.c
making rt.d from ../../../../R-3.4-branch/src/nmath/rt.c
making dchisq.d from ../../../../R-3.4-branch/src/nmath/dchisq.c
making pchisq.d from ../../../../R-3.4-branch/src/nmath/pchisq.c
making qchisq.d from ../../../../R-3.4-branch/src/nmath/qchisq.c
making rchisq.d from ../../../../R-3.4-branch/src/nmath/rchisq.c
making rnchisq.d from ../../../../R-3.4-branch/src/nmath/rnchisq.c
making dbinom.d from ../../../../R-3.4-branch/src/nmath/dbinom.c
making pbinom.d from ../../../../R-3.4-branch/src/nmath/pbinom.c
making qbinom.d from ../../../../R-3.4-branch/src/nmath/qbinom.c
making rbinom.d from ../../../../R-3.4-branch/src/nmath/rbinom.c
making rmultinom.d from ../../../../R-3.4-branch/src/nmath/rmultinom.c
making dcauchy.d from ../../../../R-3.4-branch/src/nmath/dcauchy.c
making pcauchy.d from ../../../../R-3.4-branch/src/nmath/pcauchy.c
making rcauchy.d from ../../../../R-3.4-branch/src/nmath/rcauchy.c
making qcauchy.d from ../../../../R-3.4-branch/src/nmath/qcauchy.c
making dexp.d from ../../../../R-3.4-branch/src/nmath/dexp.c
making pexp.d from ../../../../R-3.4-branch/src/nmath/pexp.c
making qexp.d from ../../../../R-3.4-branch/src/nmath/qexp.c
making rexp.d from ../../../../R-3.4-branch/src/nmath/rexp.c
making dgeom.d from ../../../../R-3.4-branch/src/nmath/dgeom.c
making pgeom.d from ../../../../R-3.4-branch/src/nmath/pgeom.c
making qgeom.d from ../../../../R-3.4-branch/src/nmath/qgeom.c
making dhyper.d from ../../../../R-3.4-branch/src/nmath/dhyper.c
making rgeom.d from ../../../../R-3.4-branch/src/nmath/rgeom.c
making phyper.d from ../../../../R-3.4-branch/src/nmath/phyper.c
making qhyper.d from ../../../../R-3.4-branch/src/nmath/qhyper.c
making rhyper.d from ../../../../R-3.4-branch/src/nmath/rhyper.c
making dnbinom.d from ../../../../R-3.4-branch/src/nmath/dnbinom.c
making pnbinom.d from ../../../../R-3.4-branch/src/nmath/pnbinom.c
making qnbinom.d from ../../../../R-3.4-branch/src/nmath/qnbinom.c
making rnbinom.d from ../../../../R-3.4-branch/src/nmath/rnbinom.c
making dpois.d from ../../../../R-3.4-branch/src/nmath/dpois.c
making ppois.d from ../../../../R-3.4-branch/src/nmath/ppois.c
making qpois.d from ../../../../R-3.4-branch/src/nmath/qpois.c
making rpois.d from ../../../../R-3.4-branch/src/nmath/rpois.c
making dweibull.d from ../../../../R-3.4-branch/src/nmath/dweibull.c
making pweibull.d from ../../../../R-3.4-branch/src/nmath/pweibull.c
making qweibull.d from ../../../../R-3.4-branch/src/nmath/qweibull.c
making rweibull.d from ../../../../R-3.4-branch/src/nmath/rweibull.c
making dlogis.d from ../../../../R-3.4-branch/src/nmath/dlogis.c
making plogis.d from ../../../../R-3.4-branch/src/nmath/plogis.c
making qlogis.d from ../../../../R-3.4-branch/src/nmath/qlogis.c
making rlogis.d from ../../../../R-3.4-branch/src/nmath/rlogis.c
making dnchisq.d from ../../../../R-3.4-branch/src/nmath/dnchisq.c
making pnchisq.d from ../../../../R-3.4-branch/src/nmath/pnchisq.c
making qnchisq.d from ../../../../R-3.4-branch/src/nmath/qnchisq.c
making dnbeta.d from ../../../../R-3.4-branch/src/nmath/dnbeta.c
making pnbeta.d from ../../../../R-3.4-branch/src/nmath/pnbeta.c
making qnbeta.d from ../../../../R-3.4-branch/src/nmath/qnbeta.c
making pnf.d from ../../../../R-3.4-branch/src/nmath/pnf.c
making pnt.d from ../../../../R-3.4-branch/src/nmath/pnt.c
making qnf.d from ../../../../R-3.4-branch/src/nmath/qnf.c
making qnt.d from ../../../../R-3.4-branch/src/nmath/qnt.c
making qtukey.d from ../../../../R-3.4-branch/src/nmath/qtukey.c
making ptukey.d from ../../../../R-3.4-branch/src/nmath/ptukey.c
making toms708.d from ../../../../R-3.4-branch/src/nmath/toms708.c
making wilcox.d from ../../../../R-3.4-branch/src/nmath/wilcox.c
making signrank.d from ../../../../R-3.4-branch/src/nmath/signrank.c
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/mlutils.c -o mlutils.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/d1mach.c -o d1mach.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/i1mach.c -o i1mach.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/fmax2.c -o fmax2.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/fmin2.c -o fmin2.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/fprec.c -o fprec.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/fround.c -o fround.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/ftrunc.c -o ftrunc.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/sign.c -o sign.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/fsign.c -o fsign.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/imax2.c -o imax2.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/imin2.c -o imin2.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/chebyshev.c -o chebyshev.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/log1p.c -o log1p.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/expm1.c -o expm1.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/lgammacor.c -o lgammacor.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/gammalims.c -o gammalims.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/stirlerr.c -o stirlerr.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/bd0.c -o bd0.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/gamma.c -o gamma.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/lgamma.c -o lgamma.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/gamma_cody.c -o gamma_cody.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/beta.c -o beta.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/lbeta.c -o lbeta.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/polygamma.c -o polygamma.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/cospi.c -o cospi.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/bessel_i.c -o bessel_i.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/bessel_j.c -o bessel_j.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/bessel_k.c -o bessel_k.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/bessel_y.c -o bessel_y.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/choose.c -o choose.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/snorm.c -o snorm.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/sexp.c -o sexp.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dgamma.c -o dgamma.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pgamma.c -o pgamma.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qgamma.c -o qgamma.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rgamma.c -o rgamma.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dbeta.c -o dbeta.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pbeta.c -o pbeta.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qbeta.c -o qbeta.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rbeta.c -o rbeta.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dunif.c -o dunif.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/punif.c -o punif.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qunif.c -o qunif.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/runif.c -o runif.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dnorm.c -o dnorm.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pnorm.c -o pnorm.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qnorm.c -o qnorm.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rnorm.c -o rnorm.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dlnorm.c -o dlnorm.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/plnorm.c -o plnorm.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qlnorm.c -o qlnorm.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rlnorm.c -o rlnorm.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/df.c -o df.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pf.c -o pf.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qf.c -o qf.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rf.c -o rf.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dnf.c -o dnf.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dt.c -o dt.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pt.c -o pt.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qt.c -o qt.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rt.c -o rt.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dnt.c -o dnt.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dchisq.c -o dchisq.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pchisq.c -o pchisq.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qchisq.c -o qchisq.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rchisq.c -o rchisq.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rnchisq.c -o rnchisq.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dbinom.c -o dbinom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pbinom.c -o pbinom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qbinom.c -o qbinom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rbinom.c -o rbinom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rmultinom.c -o rmultinom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dcauchy.c -o dcauchy.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pcauchy.c -o pcauchy.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qcauchy.c -o qcauchy.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rcauchy.c -o rcauchy.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dexp.c -o dexp.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pexp.c -o pexp.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qexp.c -o qexp.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rexp.c -o rexp.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dgeom.c -o dgeom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pgeom.c -o pgeom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qgeom.c -o qgeom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rgeom.c -o rgeom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dhyper.c -o dhyper.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/phyper.c -o phyper.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qhyper.c -o qhyper.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rhyper.c -o rhyper.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dnbinom.c -o dnbinom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pnbinom.c -o pnbinom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qnbinom.c -o qnbinom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rnbinom.c -o rnbinom.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dpois.c -o dpois.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/ppois.c -o ppois.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qpois.c -o qpois.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rpois.c -o rpois.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dweibull.c -o dweibull.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pweibull.c -o pweibull.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qweibull.c -o qweibull.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rweibull.c -o rweibull.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dlogis.c -o dlogis.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/plogis.c -o plogis.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qlogis.c -o qlogis.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/rlogis.c -o rlogis.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dnchisq.c -o dnchisq.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pnchisq.c -o pnchisq.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qnchisq.c -o qnchisq.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/dnbeta.c -o dnbeta.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pnbeta.c -o pnbeta.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qnbeta.c -o qnbeta.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pnf.c -o pnf.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/pnt.c -o pnt.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qnf.c -o qnf.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qnt.c -o qnt.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/ptukey.c -o ptukey.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/qtukey.c -o qtukey.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/toms708.c -o toms708.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/wilcox.c -o wilcox.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/nmath/signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(mlutils.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(log1p.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(expm1.o) has no symbols
ranlib libnmath.a

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(mlutils.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(log1p.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(expm1.o) has no symbols
config.status: creating src/unix/Makefile
making Rembedded.d from ../../../../R-3.4-branch/src/unix/Rembedded.c
making system.d from ../../../../R-3.4-branch/src/unix/system.c
making dynload.d from ../../../../R-3.4-branch/src/unix/dynload.c
making sys-std.d from ../../../../R-3.4-branch/src/unix/sys-std.c
making sys-unix.d from ../../../../R-3.4-branch/src/unix/sys-unix.c
making X11.d from ../../../../R-3.4-branch/src/unix/X11.c
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/unix/Rembedded.c -o Rembedded.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/unix/dynload.c -o dynload.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/unix/system.c -o system.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/unix/sys-unix.c -o sys-unix.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/unix/sys-std.c -o sys-std.o
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/unix/X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
clang -I. -I../../src/include -I../../../../R-3.4-branch/src/include -I/usr/X11/include -I/usr/local/include -DHAVE_CONFIG_H    -Wall -g -O2  -L/usr/local/lib -DR_HOME='"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch"' \
	  -o Rscript ../../../../R-3.4-branch/src/unix/Rscript.c
config.status: creating src/main/Makefile
making CommandLineArgs.d from ../../../../R-3.4-branch/src/main/CommandLineArgs.c
making RNG.d from ../../../../R-3.4-branch/src/main/RNG.c
making Renviron.d from ../../../../R-3.4-branch/src/main/Renviron.c
making Rdynload.d from ../../../../R-3.4-branch/src/main/Rdynload.c
making apply.d from ../../../../R-3.4-branch/src/main/apply.c
making agrep.d from ../../../../R-3.4-branch/src/main/agrep.c
making arithmetic.d from ../../../../R-3.4-branch/src/main/arithmetic.c
making array.d from ../../../../R-3.4-branch/src/main/array.c
making attrib.d from ../../../../R-3.4-branch/src/main/attrib.c
making bind.d from ../../../../R-3.4-branch/src/main/bind.c
making builtin.d from ../../../../R-3.4-branch/src/main/builtin.c
making character.d from ../../../../R-3.4-branch/src/main/character.c
making coerce.d from ../../../../R-3.4-branch/src/main/coerce.c
making complex.d from ../../../../R-3.4-branch/src/main/complex.c
making colors.d from ../../../../R-3.4-branch/src/main/colors.c
making connections.d from ../../../../R-3.4-branch/src/main/connections.c
making context.d from ../../../../R-3.4-branch/src/main/context.c
making cum.d from ../../../../R-3.4-branch/src/main/cum.c
making dcf.d from ../../../../R-3.4-branch/src/main/dcf.c
making datetime.d from ../../../../R-3.4-branch/src/main/datetime.c
making debug.d from ../../../../R-3.4-branch/src/main/debug.c
making deparse.d from ../../../../R-3.4-branch/src/main/deparse.c
making devices.d from ../../../../R-3.4-branch/src/main/devices.c
making dotcode.d from ../../../../R-3.4-branch/src/main/dotcode.c
making dounzip.d from ../../../../R-3.4-branch/src/main/dounzip.c
making dstruct.d from ../../../../R-3.4-branch/src/main/dstruct.c
making duplicate.d from ../../../../R-3.4-branch/src/main/duplicate.c
making edit.d from ../../../../R-3.4-branch/src/main/edit.c
making engine.d from ../../../../R-3.4-branch/src/main/engine.c
making envir.d from ../../../../R-3.4-branch/src/main/envir.c
making errors.d from ../../../../R-3.4-branch/src/main/errors.c
making eval.d from ../../../../R-3.4-branch/src/main/eval.c
making format.d from ../../../../R-3.4-branch/src/main/format.c
making gevents.d from ../../../../R-3.4-branch/src/main/gevents.c
making gram.d from ../../../../R-3.4-branch/src/main/gram.c
making gram-ex.d from ../../../../R-3.4-branch/src/main/gram-ex.c
making graphics.d from ../../../../R-3.4-branch/src/main/graphics.c
making grep.d from ../../../../R-3.4-branch/src/main/grep.c
making identical.d from ../../../../R-3.4-branch/src/main/identical.c
making inlined.d from ../../../../R-3.4-branch/src/main/inlined.c
making inspect.d from ../../../../R-3.4-branch/src/main/inspect.c
making internet.d from ../../../../R-3.4-branch/src/main/internet.c
making iosupport.d from ../../../../R-3.4-branch/src/main/iosupport.c
making lapack.d from ../../../../R-3.4-branch/src/main/lapack.c
making list.d from ../../../../R-3.4-branch/src/main/list.c
making localecharset.d from ../../../../R-3.4-branch/src/main/localecharset.c
making logic.d from ../../../../R-3.4-branch/src/main/logic.c
making main.d from ../../../../R-3.4-branch/src/main/main.c
making mapply.d from ../../../../R-3.4-branch/src/main/mapply.c
making match.d from ../../../../R-3.4-branch/src/main/match.c
making memory.d from ../../../../R-3.4-branch/src/main/memory.c
making names.d from ../../../../R-3.4-branch/src/main/names.c
making objects.d from ../../../../R-3.4-branch/src/main/objects.c
making options.d from ../../../../R-3.4-branch/src/main/options.c
making paste.d from ../../../../R-3.4-branch/src/main/paste.c
making platform.d from ../../../../R-3.4-branch/src/main/platform.c
making plot.d from ../../../../R-3.4-branch/src/main/plot.c
making plot3d.d from ../../../../R-3.4-branch/src/main/plot3d.c
making plotmath.d from ../../../../R-3.4-branch/src/main/plotmath.c
making print.d from ../../../../R-3.4-branch/src/main/print.c
making printarray.d from ../../../../R-3.4-branch/src/main/printarray.c
making printvector.d from ../../../../R-3.4-branch/src/main/printvector.c
making printutils.d from ../../../../R-3.4-branch/src/main/printutils.c
making qsort.d from ../../../../R-3.4-branch/src/main/qsort.c
making radixsort.d from ../../../../R-3.4-branch/src/main/radixsort.c
making random.d from ../../../../R-3.4-branch/src/main/random.c
making raw.d from ../../../../R-3.4-branch/src/main/raw.c
making registration.d from ../../../../R-3.4-branch/src/main/registration.c
making relop.d from ../../../../R-3.4-branch/src/main/relop.c
making rlocale.d from ../../../../R-3.4-branch/src/main/rlocale.c
making saveload.d from ../../../../R-3.4-branch/src/main/saveload.c
making scan.d from ../../../../R-3.4-branch/src/main/scan.c
making seq.d from ../../../../R-3.4-branch/src/main/seq.c
making serialize.d from ../../../../R-3.4-branch/src/main/serialize.c
making sort.d from ../../../../R-3.4-branch/src/main/sort.c
making source.d from ../../../../R-3.4-branch/src/main/source.c
making split.d from ../../../../R-3.4-branch/src/main/split.c
making sprintf.d from ../../../../R-3.4-branch/src/main/sprintf.c
making startup.d from ../../../../R-3.4-branch/src/main/startup.c
making subassign.d from ../../../../R-3.4-branch/src/main/subassign.c
making subscript.d from ../../../../R-3.4-branch/src/main/subscript.c
making subset.d from ../../../../R-3.4-branch/src/main/subset.c
making summary.d from ../../../../R-3.4-branch/src/main/summary.c
making sysutils.d from ../../../../R-3.4-branch/src/main/sysutils.c
making times.d from ../../../../R-3.4-branch/src/main/times.c
making unique.d from ../../../../R-3.4-branch/src/main/unique.c
making util.d from ../../../../R-3.4-branch/src/main/util.c
making version.d from ../../../../R-3.4-branch/src/main/version.c
making g_alab_her.d from ../../../../R-3.4-branch/src/main/g_alab_her.c
making g_cntrlify.d from ../../../../R-3.4-branch/src/main/g_cntrlify.c
making g_fontdb.d from ../../../../R-3.4-branch/src/main/g_fontdb.c
making g_her_glyph.d from ../../../../R-3.4-branch/src/main/g_her_glyph.c
making Rmain.d from ../../../../R-3.4-branch/src/main/Rmain.c
making alloca.d from ../../../../R-3.4-branch/src/main/alloca.c
making mkdtemp.d from ../../../../R-3.4-branch/src/main/mkdtemp.c
making strdup.d from ../../../../R-3.4-branch/src/main/strdup.c
making strncasecmp.d from ../../../../R-3.4-branch/src/main/strncasecmp.c
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/CommandLineArgs.c -o CommandLineArgs.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/Rdynload.c -o Rdynload.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/Renviron.c -o Renviron.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/RNG.c -o RNG.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/agrep.c -o agrep.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/apply.c -o apply.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/arithmetic.c -o arithmetic.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/array.c -o array.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/attrib.c -o attrib.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/bind.c -o bind.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/builtin.c -o builtin.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/character.c -o character.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/coerce.c -o coerce.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/colors.c -o colors.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/complex.c -o complex.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/connections.c -o connections.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/context.c -o context.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/cum.c -o cum.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/dcf.c -o dcf.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/datetime.c -o datetime.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/debug.c -o debug.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/deparse.c -o deparse.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/devices.c -o devices.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/dotcode.c -o dotcode.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/dounzip.c -o dounzip.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/dstruct.c -o dstruct.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/duplicate.c -o duplicate.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/edit.c -o edit.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/engine.c -o engine.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/envir.c -o envir.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/errors.c -o errors.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/eval.c -o eval.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/format.c -o format.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/gevents.c -o gevents.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/gram.c -o gram.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/gram-ex.c -o gram-ex.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/graphics.c -o graphics.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/grep.c -o grep.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/identical.c -o identical.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/inlined.c -o inlined.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/inspect.c -o inspect.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/internet.c -o internet.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/iosupport.c -o iosupport.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/lapack.c -o lapack.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/list.c -o list.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/localecharset.c -o localecharset.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/logic.c -o logic.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/main.c -o main.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/mapply.c -o mapply.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/match.c -o match.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/memory.c -o memory.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/names.c -o names.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/objects.c -o objects.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/options.c -o options.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/paste.c -o paste.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/platform.c -o platform.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/plot.c -o plot.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/plot3d.c -o plot3d.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/plotmath.c -o plotmath.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/print.c -o print.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/printarray.c -o printarray.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/printvector.c -o printvector.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/printutils.c -o printutils.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/qsort.c -o qsort.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/radixsort.c -o radixsort.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/random.c -o random.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/raw.c -o raw.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/registration.c -o registration.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/relop.c -o relop.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/rlocale.c -o rlocale.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/saveload.c -o saveload.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/scan.c -o scan.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/seq.c -o seq.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/serialize.c -o serialize.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/sort.c -o sort.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/source.c -o source.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/split.c -o split.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/sprintf.c -o sprintf.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/startup.c -o startup.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/subassign.c -o subassign.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/subscript.c -o subscript.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/subset.c -o subset.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/summary.c -o summary.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/sysutils.c -o sysutils.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/times.c -o times.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/unique.c -o unique.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/util.c -o util.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/version.c -o version.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/g_alab_her.c -o g_alab_her.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/g_cntrlify.c -o g_cntrlify.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/g_fontdb.c -o g_fontdb.o
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/g_her_glyph.c -o g_her_glyph.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.4-branch/src/main/xxxpr.f -o xxxpr.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -install_name libR.dylib -compatibility_version 3.4.0  -current_version 3.4.4  -headerpad_max_install_names -o libR.dylib CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a  ../extra/intl/libintl.a ../extra/tzone/libtz.a -L../../lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm    -Wl,-framework -Wl,CoreFoundation -lreadline  -lpcre -llzma -lbz2 -lz -licucore -lm -liconv  
mkdir /Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/bin/exec
clang -I../../../../R-3.4-branch/src/extra  -I. -I../../src/include -I../../../../R-3.4-branch/src/include  -I/usr/local/include -I../../../../R-3.4-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.4-branch/src/main/Rmain.c -o Rmain.o
clang -fopenmp  -L../../lib -L/usr/local/lib -o R.bin Rmain.o  -lR -lRblas
making devX11.d from ../../../../../R-3.4-branch/src/modules/X11/devX11.c
making Lapack.d from ../../../../../R-3.4-branch/src/modules/lapack/Lapack.c
making rbitmap.d from ../../../../../R-3.4-branch/src/modules/X11/rbitmap.c
making Rhttpd.d from ../../../../../R-3.4-branch/src/modules/internet/Rhttpd.c
making rotated.d from ../../../../../R-3.4-branch/src/modules/X11/rotated.c
making Rsock.d from ../../../../../R-3.4-branch/src/modules/internet/Rsock.c
making internet.d from ../../../../../R-3.4-branch/src/modules/internet/internet.c
making libcurl.d from ../../../../../R-3.4-branch/src/modules/internet/libcurl.c
making nanoftp.d from ../../../../../R-3.4-branch/src/modules/internet/nanoftp.c
making sock.d from ../../../../../R-3.4-branch/src/modules/internet/sock.c
making nanohttp.d from ../../../../../R-3.4-branch/src/modules/internet/nanohttp.c
making sockconn.d from ../../../../../R-3.4-branch/src/modules/internet/sockconn.c
gfortran -fPIC  -g -O2 -ffloat-store -c ../../../../../R-3.4-branch/src/modules/lapack/dlamch.f -o dlamch.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../../R-3.4-branch/src/modules/lapack/dlapack.f -o dlapack.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../../R-3.4-branch/src/modules/lapack/cmplx.f -o cmplx.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.4-branch/src/modules/internet/Rhttpd.c -o Rhttpd.o
clang -I/opt/X11/include/libpng16  -I/usr/local/include  -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.4-branch/src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.4-branch/src/modules/X11/devX11.c -o devX11.o
clang -I/opt/X11/include/libpng16  -I/usr/local/include  -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.4-branch/src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.4-branch/src/modules/X11/rotated.c -o rotated.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.4-branch/src/modules/internet/Rsock.c -o Rsock.o
clang -I/opt/X11/include/libpng16  -I/usr/local/include  -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.4-branch/src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.4-branch/src/modules/X11/rbitmap.c -o rbitmap.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.4-branch/src/modules/internet/internet.c -o internet.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.4-branch/src/modules/internet/libcurl.c -o libcurl.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.4-branch/src/modules/internet/nanoftp.c -o nanoftp.o
clang -I/opt/X11/include/libpng16  -I/usr/local/include  -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.4-branch/src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.4-branch/src/modules/X11/dataentry.c -o dataentry.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.4-branch/src/modules/internet/nanohttp.c -o nanohttp.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.4-branch/src/modules/internet/sock.c -o sock.o
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.4-branch/src/modules/internet/sockconn.c -o sockconn.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../lib -L/usr/local/lib -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR   -Wl,-framework -Wl,CoreFoundation
mkdir /Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/modules
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../lib -L/usr/local/lib -o R_X11.so devX11.o rotated.o rbitmap.o -L/usr/local/lib -ltiff  -ljpeg -L/opt/X11/lib -lpng16  -lSM -lICE -L/opt/X11/lib -lz -lcairo -lz -lpixman-1 -lfontconfig -lexpat -lfreetype -lz -lbz2 -lpng16 -lz -lxcb-shm -lX11-xcb -lxcb-render -lXrender -lXext -lX11 -lxcb -lXau -lXdmcp  -L/opt/X11/lib -lX11 -lXt -lXmu  -lR   -Wl,-framework -Wl,CoreFoundation
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../lib -L/usr/local/lib -o R_de.so dataentry.o -lSM -lICE -L/opt/X11/lib -lz -lcairo -lz -lpixman-1 -lfontconfig -lexpat -lfreetype -lz -lbz2 -lpng16 -lz -lxcb-shm -lX11-xcb -lxcb-render -lXrender -lXext -lX11 -lxcb -lXau -lXdmcp  -L/opt/X11/lib -lX11 -lXt -lXmu  -lR   -Wl,-framework -Wl,CoreFoundation
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -o libRlapack.dylib dlamch.o dlapack.o cmplx.o  -install_name libRlapack.dylib -compatibility_version 3.4.0 -current_version 3.4.4  -headerpad_max_install_names -L../../../lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm  -L../../../lib -lR

ld: warning: could not create compact unwind for _zhseqr_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _dpbtrf_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _dhseqr_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _dgbtrf_: stack subq instruction is too different from dwarf stack size
clang -I. -I../../../src/include -I../../../../../R-3.4-branch/src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.4-branch/src/modules/lapack/Lapack.c -o Lapack.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../lib -L/usr/local/lib -o lapack.so  Lapack.o  -lR  -Wl,-framework -Wl,CoreFoundation -L../../../lib -lRlapack -L../../../lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm
/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib/libRlapack.dylib is unchanged
mkdir ../../library
building system startup profile
mkdir ../../../library/base
mkdir ../../../library/base/R
building package 'translations'
mkdir ../../../library/translations
building package 'base'
mkdir ../../../library/base/demo

mv: all.R: set owner/group (was: 501/0): Operation not permitted
building package 'tools'
mkdir ../../../library/tools
mkdir ../../../library/tools/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making text.d from ../../../../../../R-3.4-branch/src/library/tools/src/text.c
making init.d from ../../../../../../R-3.4-branch/src/library/tools/src/init.c
making Rmd5.d from ../../../../../../R-3.4-branch/src/library/tools/src/Rmd5.c
making md5.d from ../../../../../../R-3.4-branch/src/library/tools/src/md5.c
making signals.d from ../../../../../../R-3.4-branch/src/library/tools/src/signals.c
making install.d from ../../../../../../R-3.4-branch/src/library/tools/src/install.c
making getfmts.d from ../../../../../../R-3.4-branch/src/library/tools/src/getfmts.c
making http.d from ../../../../../../R-3.4-branch/src/library/tools/src/http.c
making gramLatex.d from ../../../../../../R-3.4-branch/src/library/tools/src/gramLatex.c
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tools/src/text.c -o text.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tools/src/init.c -o init.o
making gramRd.d from ../../../../../../R-3.4-branch/src/library/tools/src/gramRd.c
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tools/src/Rmd5.c -o Rmd5.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tools/src/md5.c -o md5.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tools/src/signals.c -o signals.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tools/src/install.c -o install.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tools/src/getfmts.c -o getfmts.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tools/src/http.c -o http.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tools/src/gramLatex.c -o gramLatex.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tools/src/gramRd.c -o gramRd.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/tools/libs
installing 'sysdata.rda'
building package 'compiler'
mkdir ../../../library/compiler
mkdir ../../../library/compiler/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
byte-compiling package 'compiler'
byte-compiling package 'base'
byte-compiling package 'tools'
building package 'utils'
mkdir ../../../library/utils
mkdir ../../../library/utils/doc
mkdir ../../../library/utils/R
mkdir ../../../library/utils/Sweave
mkdir ../../../library/utils/misc

mv: all.R: set owner/group (was: 501/0): Operation not permitted
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/utils/src/init.c -o init.o
making init.d from ../../../../../../R-3.4-branch/src/library/utils/src/init.c
making io.d from ../../../../../../R-3.4-branch/src/library/utils/src/io.c
making size.d from ../../../../../../R-3.4-branch/src/library/utils/src/size.c
making sock.d from ../../../../../../R-3.4-branch/src/library/utils/src/sock.c
making stubs.d from ../../../../../../R-3.4-branch/src/library/utils/src/stubs.c
making utils.d from ../../../../../../R-3.4-branch/src/library/utils/src/utils.c
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/utils/src/io.c -o io.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/utils/src/size.c -o size.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/utils/src/sock.c -o sock.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/utils/src/stubs.c -o stubs.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/utils/src/utils.c -o utils.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/utils/libs
installing 'sysdata.rda'
byte-compiling package 'utils'
building package 'grDevices'
mkdir ../../../library/grDevices
mkdir ../../../library/grDevices/R
mkdir ../../../library/grDevices/afm

mv: all.R: set owner/group (was: 501/0): Operation not permitted
mkdir ../../../library/grDevices/enc
mkdir ../../../library/grDevices/icc
making axis_scales.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/axis_scales.c
making chull.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/chull.c
making devices.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/devices.c
making init.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/init.c
making stubs.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/stubs.c
making colors.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/colors.c
making devCairo.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/devCairo.c
making devPicTeX.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/devPicTeX.c
making devPS.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/devPS.c
making devQuartz.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/devQuartz.c
making qdBitmap.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/qdBitmap.c
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/axis_scales.c -o axis_scales.o
making qdPDF.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/qdPDF.c
making qdCocoa.d from ../../../../../../R-3.4-branch/src/library/grDevices/src/qdCocoa.m
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/chull.c -o chull.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/devices.c -o devices.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/init.c -o init.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/stubs.c -o stubs.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/colors.c -o colors.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/devCairo.c -o devCairo.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/devPicTeX.c -o devPicTeX.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/devPS.c -o devPS.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/devQuartz.c -o devQuartz.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/qdBitmap.c -o qdBitmap.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/qdPDF.c -o qdPDF.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fPIC  -Wall -g -O2 -fobjc-exceptions  -c ../../../../../../R-3.4-branch/src/library/grDevices/src/qdCocoa.m -o qdCocoa.o

../../../../../../R-3.4-branch/src/library/grDevices/src/devQuartz.c:646:23: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
            atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                      ^
/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.4-branch/src/library/grDevices/src/devQuartz.c:648:27: warning: 'ATSFontFindFromPostScriptName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                atsFont = ATSFontFindFromPostScriptName(cfFontName, kATSOptionFlagsDefault);
                          ^
/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:820:1: note: 'ATSFontFindFromPostScriptName' has been explicitly marked deprecated here
ATSFontFindFromPostScriptName(
^
../../../../../../R-3.4-branch/src/library/grDevices/src/devQuartz.c:675:27: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                          ^
/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.4-branch/src/library/grDevices/src/devQuartz.c:676:41: warning: 'ATSFontFindFromPostScriptName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                if (!atsFont) atsFont = ATSFontFindFromPostScriptName(cfFontName, kATSOptionFlagsDefault);
                                        ^
/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:820:1: note: 'ATSFontFindFromPostScriptName' has been explicitly marked deprecated here
ATSFontFindFromPostScriptName(
^
../../../../../../R-3.4-branch/src/library/grDevices/src/devQuartz.c:682:35: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                        atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                                  ^
/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.4-branch/src/library/grDevices/src/devQuartz.c:688:39: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                            atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                                      ^
/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.4-branch/src/library/grDevices/src/devQuartz.c:696:35: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                        atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                                  ^
/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.4-branch/src/library/grDevices/src/devQuartz.c:715:12: warning: 'CGFontCreateWithPlatformFont' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations]
    return CGFontCreateWithPlatformFont(&atsFont);
           ^
/System/Library/Frameworks/CoreGraphics.framework/Headers/CGFont.h:64:32: note: 'CGFontCreateWithPlatformFont' has been explicitly marked deprecated here
CG_EXTERN CGFontRef __nullable CGFontCreateWithPlatformFont(
                               ^
../../../../../../R-3.4-branch/src/library/grDevices/src/qdBitmap.c:61:39: warning: 'CFURLCreateStringByAddingPercentEscapes' is deprecated: first deprecated in macOS 10.11 - Use [NSString stringByAddingPercentEncodingWithAllowedCharacters:] instead, which always uses the recommended UTF-8 encoding, and which encodes for a specific URL component or subcomponent (since each URL component or subcomponent has different rules for what characters are valid). [-Wdeprecated-declarations]
            CFStringRef pathEscaped = CFURLCreateStringByAddingPercentEscapes(kCFAllocatorDefault, pathString, NULL, NULL, kCFStringEncodingUTF8);
                                      ^
/System/Library/Frameworks/CoreFoundation.framework/Headers/CFURL.h:395:13: note: 'CFURLCreateStringByAddingPercentEscapes' has been explicitly marked deprecated here
CFStringRef CFURLCreateStringByAddingPercentEscapes(CFAllocatorRef allocator, CFStringRef originalString, CFStringRef charactersToLeaveUnescaped, CFStringRef legalURLCharactersToBeEscaped, CFStringEncoding encoding) CF_DEPRECATED(10_0, 10_11, 2_0, 9_0, "Use [NSString stringByAddingPercentEncodingWithAllowedCharacters:] instead, which always uses the recommended UTF-8 encoding, and which encodes for a specific URL component or subcomponent (since each URL component or subcomponent has different rules for what characters are valid).");
            ^
../../../../../../R-3.4-branch/src/library/grDevices/src/devQuartz.c:997:5: warning: 'CGContextShowGlyphsWithAdvances' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
    CGContextShowGlyphsWithAdvances(ctx,glyphs, g_adv, len);
    ^
/System/Library/Frameworks/CoreGraphics.framework/Headers/CGContext.h:1066:16: note: 'CGContextShowGlyphsWithAdvances' has been explicitly marked deprecated here
CG_EXTERN void CGContextShowGlyphsWithAdvances(CGContextRef __nullable c,
               ^
1 warning generated.
../../../../../../R-3.4-branch/src/library/grDevices/src/qdCocoa.m:101:23: warning: sending 'QuartzCocoaView *' to parameter of incompatible type 'id _Nullable'
        [window setDelegate: view];
                             ^~~~
/System/Library/Frameworks/AppKit.framework/Headers/NSWindow.h:317:51: note: passing argument to parameter 'delegate' here
@property (nullable, assign) id delegate;
                                                  ^
9 warnings generated.
../../../../../../R-3.4-branch/src/library/grDevices/src/qdCocoa.m:85:14: warning: unused variable 'canvasColor' [-Wunused-variable]
    NSColor* canvasColor = nil;
             ^
../../../../../../R-3.4-branch/src/library/grDevices/src/qdCocoa.m:268:6: warning: 'setRequiredFileType:' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations]
        [sp setRequiredFileType:@"pdf"];
            ^
/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:289:1: note: 'setRequiredFileType:' has been explicitly marked deprecated here
- (void)setRequiredFileType:(nullable NSString *)type NS_DEPRECATED_MAC(10_0, 10_6);
^
../../../../../../R-3.4-branch/src/library/grDevices/src/qdCocoa.m:270:19: warning: 'runModalForDirectory:file:' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations]
        int answer = [sp runModalForDirectory:nil file:@"Rplot.pdf"];
                         ^
/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:297:1: note: 'runModalForDirectory:file:' has been explicitly marked deprecated here
- (NSInteger)runModalForDirectory:(nullable NSString *)path file:(nullable NSString *)name NS_DEPRECATED_MAC(10_0, 10_6);
^
../../../../../../R-3.4-branch/src/library/grDevices/src/qdCocoa.m:271:15: warning: 'NSOKButton' is deprecated: first deprecated in macOS 10.10 - Use NSModalResponseOK instead [-Wdeprecated-declarations]
        if(answer == NSOKButton)
                     ^
/System/Library/Frameworks/AppKit.framework/Headers/NSPanel.h:85:5: note: 'NSOKButton' has been explicitly marked deprecated here
    NSOKButton NS_ENUM_DEPRECATED_MAC(10_0, 10_10, "Use NSModalResponseOK instead") = 1, // NSModalResponseOK should be used instead (in NSWindow)
    ^
../../../../../../R-3.4-branch/src/library/grDevices/src/qdCocoa.m:272:29: warning: 'filename' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations]
                if (![self writeAsPDF:[sp filename]]) NSBeep();
                                          ^
/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:279:1: note: 'filename' has been explicitly marked deprecated here
- (NSString *)filename NS_DEPRECATED_MAC(10_0, 10_6);
^
../../../../../../R-3.4-branch/src/library/grDevices/src/qdCocoa.m:615:13: warning: 'GetFrontProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
        if (GetFrontProcess(&frProc) == noErr) {
            ^
/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:434:1: note: 'GetFrontProcess' has been explicitly marked deprecated here
GetFrontProcess(ProcessSerialNumber * PSN)                    AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9;
^
../../../../../../R-3.4-branch/src/library/grDevices/src/qdCocoa.m:616:17: warning: 'GetCurrentProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
            if (GetCurrentProcess(&myProc) == noErr) {
                ^
/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:415:1: note: 'GetCurrentProcess' has been explicitly marked deprecated here
MacGetCurrentProcess(ProcessSerialNumber * PSN)               AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9;
^
/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:412:34: note: expanded from macro 'MacGetCurrentProcess'
    #define MacGetCurrentProcess GetCurrentProcess
                                 ^
../../../../../../R-3.4-branch/src/library/grDevices/src/qdCocoa.m:617:21: warning: 'SameProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
                if (SameProcess(&frProc, &myProc, &sameProc) == noErr && !sameProc) {
                    ^
/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:696:1: note: 'SameProcess' has been explicitly marked deprecated here
SameProcess(
^
../../../../../../R-3.4-branch/src/library/grDevices/src/qdCocoa.m:620:17: warning: 'SetFrontProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
                SetFrontProcess(&myProc);
                ^
/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:603:1: note: 'SetFrontProcess' has been explicitly marked deprecated here
SetFrontProcess(const ProcessSerialNumber * PSN)              AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9;
^
10 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o qdBitmap.o qdPDF.o qdCocoa.o -framework AppKit -lz -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/grDevices/libs
making cairoBM.d from ../../../../../../../R-3.4-branch/src/library/grDevices/src/cairo/cairoBM.c
clang -I. -I../../../../../src/include -I../../../../../../../R-3.4-branch/src/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../../../R-3.4-branch/src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../../../R-3.4-branch/src/library/grDevices/src/cairo/cairoBM.c -o cairoBM.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../../lib -L/usr/local/lib -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -L/usr/local/lib -ltiff  -ljpeg -L/opt/X11/lib -lpng16  -L/opt/X11/lib -lz -lcairo -lz -lpixman-1 -lfontconfig -lexpat -lfreetype -lz -lbz2 -lpng16 -lz -lxcb-shm -lX11-xcb -lxcb-render -lXrender -lXext -lX11 -lxcb -lXau -lXdmcp  -L../../../../../lib -lR   -Wl,-framework -Wl,CoreFoundation
byte-compiling package 'grDevices'
building package 'graphics'
mkdir ../../../library/graphics
mkdir ../../../library/graphics/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making init.d from ../../../../../../R-3.4-branch/src/library/graphics/src/init.c
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/graphics/src/init.c -o init.o
making graphics.d from ../../../../../../R-3.4-branch/src/library/graphics/src/graphics.c
making base.d from ../../../../../../R-3.4-branch/src/library/graphics/src/base.c
making par.d from ../../../../../../R-3.4-branch/src/library/graphics/src/par.c
making plot.d from ../../../../../../R-3.4-branch/src/library/graphics/src/plot.c
making plot3d.d from ../../../../../../R-3.4-branch/src/library/graphics/src/plot3d.c
making stem.d from ../../../../../../R-3.4-branch/src/library/graphics/src/stem.c
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/graphics/src/base.c -o base.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/graphics/src/graphics.c -o graphics.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/graphics/src/par.c -o par.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/graphics/src/plot.c -o plot.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/graphics/src/plot3d.c -o plot3d.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.4-branch/src/main  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/graphics/src/stem.c -o stem.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/graphics/libs
byte-compiling package 'graphics'
building package 'stats'
mkdir ../../../library/stats
mkdir ../../../library/stats/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making init.d from ../../../../../../R-3.4-branch/src/library/stats/src/init.c
making kmeans.d from ../../../../../../R-3.4-branch/src/library/stats/src/kmeans.c
making ansari.d from ../../../../../../R-3.4-branch/src/library/stats/src/ansari.c
making bandwidths.d from ../../../../../../R-3.4-branch/src/library/stats/src/bandwidths.c
making d2x2xk.d from ../../../../../../R-3.4-branch/src/library/stats/src/d2x2xk.c
making chisqsim.d from ../../../../../../R-3.4-branch/src/library/stats/src/chisqsim.c
making fexact.d from ../../../../../../R-3.4-branch/src/library/stats/src/fexact.c
making kendall.d from ../../../../../../R-3.4-branch/src/library/stats/src/kendall.c
making ks.d from ../../../../../../R-3.4-branch/src/library/stats/src/ks.c
making line.d from ../../../../../../R-3.4-branch/src/library/stats/src/line.c
making smooth.d from ../../../../../../R-3.4-branch/src/library/stats/src/smooth.c
making prho.d from ../../../../../../R-3.4-branch/src/library/stats/src/prho.c
making swilk.d from ../../../../../../R-3.4-branch/src/library/stats/src/swilk.c
making ksmooth.d from ../../../../../../R-3.4-branch/src/library/stats/src/ksmooth.c
making loessc.d from ../../../../../../R-3.4-branch/src/library/stats/src/loessc.c
making monoSpl.d from ../../../../../../R-3.4-branch/src/library/stats/src/monoSpl.c
making isoreg.d from ../../../../../../R-3.4-branch/src/library/stats/src/isoreg.c
making Srunmed.d from ../../../../../../R-3.4-branch/src/library/stats/src/Srunmed.c
making dblcen.d from ../../../../../../R-3.4-branch/src/library/stats/src/dblcen.c
making distance.d from ../../../../../../R-3.4-branch/src/library/stats/src/distance.c
making hclust-utils.d from ../../../../../../R-3.4-branch/src/library/stats/src/hclust-utils.c
making nls.d from ../../../../../../R-3.4-branch/src/library/stats/src/nls.c
making rWishart.d from ../../../../../../R-3.4-branch/src/library/stats/src/rWishart.c
making HoltWinters.d from ../../../../../../R-3.4-branch/src/library/stats/src/HoltWinters.c
making PPsum.d from ../../../../../../R-3.4-branch/src/library/stats/src/PPsum.c
making arima.d from ../../../../../../R-3.4-branch/src/library/stats/src/arima.c
making burg.d from ../../../../../../R-3.4-branch/src/library/stats/src/burg.c
making filter.d from ../../../../../../R-3.4-branch/src/library/stats/src/filter.c
making mAR.d from ../../../../../../R-3.4-branch/src/library/stats/src/mAR.c
making starma.d from ../../../../../../R-3.4-branch/src/library/stats/src/starma.c
making pacf.d from ../../../../../../R-3.4-branch/src/library/stats/src/pacf.c
making port.d from ../../../../../../R-3.4-branch/src/library/stats/src/port.c
making family.d from ../../../../../../R-3.4-branch/src/library/stats/src/family.c
making sbart.d from ../../../../../../R-3.4-branch/src/library/stats/src/sbart.c
making approx.d from ../../../../../../R-3.4-branch/src/library/stats/src/approx.c
making loglin.d from ../../../../../../R-3.4-branch/src/library/stats/src/loglin.c
making lowess.d from ../../../../../../R-3.4-branch/src/library/stats/src/lowess.c
making massdist.d from ../../../../../../R-3.4-branch/src/library/stats/src/massdist.c
making splines.d from ../../../../../../R-3.4-branch/src/library/stats/src/splines.c
making lm.d from ../../../../../../R-3.4-branch/src/library/stats/src/lm.c
making complete_cases.d from ../../../../../../R-3.4-branch/src/library/stats/src/complete_cases.c
making cov.d from ../../../../../../R-3.4-branch/src/library/stats/src/cov.c
making deriv.d from ../../../../../../R-3.4-branch/src/library/stats/src/deriv.c
making fft.d from ../../../../../../R-3.4-branch/src/library/stats/src/fft.c
making fourier.d from ../../../../../../R-3.4-branch/src/library/stats/src/fourier.c
making model.d from ../../../../../../R-3.4-branch/src/library/stats/src/model.c
making optim.d from ../../../../../../R-3.4-branch/src/library/stats/src/optim.c
making optimize.d from ../../../../../../R-3.4-branch/src/library/stats/src/optimize.c
making integrate.d from ../../../../../../R-3.4-branch/src/library/stats/src/integrate.c
making random.d from ../../../../../../R-3.4-branch/src/library/stats/src/random.c
making distn.d from ../../../../../../R-3.4-branch/src/library/stats/src/distn.c
making zeroin.d from ../../../../../../R-3.4-branch/src/library/stats/src/zeroin.c
making rcont.d from ../../../../../../R-3.4-branch/src/library/stats/src/rcont.c
making influence.d from ../../../../../../R-3.4-branch/src/library/stats/src/influence.c
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/init.c -o init.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/kmeans.c -o kmeans.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/ansari.c -o ansari.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/bandwidths.c -o bandwidths.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/chisqsim.c -o chisqsim.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/d2x2xk.c -o d2x2xk.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/fexact.c -o fexact.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/kendall.c -o kendall.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/ks.c -o ks.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/line.c -o line.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/smooth.c -o smooth.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/prho.c -o prho.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/swilk.c -o swilk.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/ksmooth.c -o ksmooth.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/loessc.c -o loessc.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/monoSpl.c -o monoSpl.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/isoreg.c -o isoreg.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/Srunmed.c -o Srunmed.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/dblcen.c -o dblcen.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/distance.c -o distance.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/hclust-utils.c -o hclust-utils.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/nls.c -o nls.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/rWishart.c -o rWishart.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/HoltWinters.c -o HoltWinters.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/PPsum.c -o PPsum.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/arima.c -o arima.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/burg.c -o burg.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/filter.c -o filter.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/mAR.c -o mAR.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/pacf.c -o pacf.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/starma.c -o starma.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/port.c -o port.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/family.c -o family.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/sbart.c -o sbart.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/approx.c -o approx.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/loglin.c -o loglin.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/lowess.c -o lowess.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/massdist.c -o massdist.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/splines.c -o splines.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/lm.c -o lm.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/complete_cases.c -o complete_cases.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/cov.c -o cov.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/deriv.c -o deriv.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/fft.c -o fft.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/fourier.c -o fourier.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/model.c -o model.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/optim.c -o optim.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/optimize.c -o optimize.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/integrate.c -o integrate.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/random.c -o random.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/distn.c -o distn.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/zeroin.c -o zeroin.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/rcont.c -o rcont.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/influence.c -o influence.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/bsplvd.f -o bsplvd.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/bvalue.f -o bvalue.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/bvalus.f -o bvalus.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/loessf.f -o loessf.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/ppr.f -o ppr.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/qsbart.f -o qsbart.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/sgram.f -o sgram.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/sinerp.f -o sinerp.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/sslvrg.f -o sslvrg.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/stxwx.f -o stxwx.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/hclust.f -o hclust.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/kmns.f -o kmns.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/eureka.f -o eureka.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/stl.f -o stl.o
gfortran -fPIC  -g -O2 -ffloat-store -c ../../../../../../R-3.4-branch/src/library/stats/src/portsrc.f -o portsrc.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.4-branch/src/library/stats/src/lminfl.f -o lminfl.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -L../../../../lib -lRlapack -L../../../../lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation

ld: warning: ld: warning: could not create compact unwind for _ehg136_: stack subq instruction is too different from dwarf stack sizecould not create compact unwind for _splineaa_: stack subq instruction is too different from dwarf stack size

ld: warning: could not create compact unwind for _ehg139_: stack subq instruction is too different from dwarf stack size
mkdir ../../../../library/stats/libs
byte-compiling package 'stats'
building package 'datasets'
mkdir ../../../library/datasets
mkdir ../../../library/datasets/data
building package 'methods'
mkdir ../../../library/methods
mkdir ../../../library/methods/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making do_substitute_direct.d from ../../../../../../R-3.4-branch/src/library/methods/src/do_substitute_direct.c
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/methods/src/do_substitute_direct.c -o do_substitute_direct.o
making init.d from ../../../../../../R-3.4-branch/src/library/methods/src/init.c
making slot.d from ../../../../../../R-3.4-branch/src/library/methods/src/slot.c
making methods_list_dispatch.d from ../../../../../../R-3.4-branch/src/library/methods/src/methods_list_dispatch.c
making class_support.d from ../../../../../../R-3.4-branch/src/library/methods/src/class_support.c
making utils.d from ../../../../../../R-3.4-branch/src/library/methods/src/utils.c
making tests.d from ../../../../../../R-3.4-branch/src/library/methods/src/tests.c
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/methods/src/init.c -o init.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/methods/src/methods_list_dispatch.c -o methods_list_dispatch.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/methods/src/slot.c -o slot.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/methods/src/class_support.c -o class_support.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/methods/src/tests.c -o tests.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/methods/src/utils.c -o utils.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/methods/libs
byte-compiling 'methods'
initializing class and method definitions ... done
building package 'grid'
mkdir ../../../library/grid
mkdir ../../../library/grid/doc
mkdir ../../../library/grid/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making gpar.d from ../../../../../../R-3.4-branch/src/library/grid/src/gpar.c
making grid.d from ../../../../../../R-3.4-branch/src/library/grid/src/grid.c
making just.d from ../../../../../../R-3.4-branch/src/library/grid/src/just.c
making matrix.d from ../../../../../../R-3.4-branch/src/library/grid/src/matrix.c
making layout.d from ../../../../../../R-3.4-branch/src/library/grid/src/layout.c
making register.d from ../../../../../../R-3.4-branch/src/library/grid/src/register.c
making state.d from ../../../../../../R-3.4-branch/src/library/grid/src/state.c
making unit.d from ../../../../../../R-3.4-branch/src/library/grid/src/unit.c
clang -I../../../../include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grid/src/gpar.c -o gpar.o
making util.d from ../../../../../../R-3.4-branch/src/library/grid/src/util.c
making viewport.d from ../../../../../../R-3.4-branch/src/library/grid/src/viewport.c
clang -I../../../../include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grid/src/grid.c -o grid.o
clang -I../../../../include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grid/src/just.c -o just.o
clang -I../../../../include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grid/src/layout.c -o layout.o
clang -I../../../../include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grid/src/matrix.c -o matrix.o
clang -I../../../../include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grid/src/register.c -o register.o
clang -I../../../../include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grid/src/state.c -o state.o
clang -I../../../../include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grid/src/unit.c -o unit.o
clang -I../../../../include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grid/src/util.c -o util.o
clang -I../../../../include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/grid/src/viewport.c -o viewport.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/grid/libs
byte-compiling package 'grid'
building package 'splines'
mkdir ../../../library/splines
mkdir ../../../library/splines/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
clang -I../../../../include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/splines/src/splines.c -o splines.o
making splines.d from ../../../../../../R-3.4-branch/src/library/splines/src/splines.c
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o splines.so splines.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/splines/libs
byte-compiling package 'splines'
building package 'stats4'
mkdir ../../../library/stats4
mkdir ../../../library/stats4/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
byte-compiling package 'stats4'
building package 'tcltk'
mkdir ../../../library/tcltk
mkdir ../../../library/tcltk/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
mkdir ../../../library/tcltk/exec
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/opt/X11/include  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tcltk/src/init.c -o init.o
making init.d from ../../../../../../R-3.4-branch/src/library/tcltk/src/init.c
making tcltk.d from ../../../../../../R-3.4-branch/src/library/tcltk/src/tcltk.c
making tcltk_unix.d from ../../../../../../R-3.4-branch/src/library/tcltk/src/tcltk_unix.c
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/opt/X11/include  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tcltk/src/tcltk.c -o tcltk.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/opt/X11/include  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/tcltk/src/tcltk_unix.c -o tcltk_unix.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/local/lib -ltcl8.6 -L/usr/local/lib -ltk8.6 -L/opt/X11/lib -lX11 -Wl,-weak-lXss -lXext -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/tcltk/libs
byte-compiling package 'tcltk'
building package 'parallel'
mkdir ../../../library/parallel
mkdir ../../../library/parallel/doc
mkdir ../../../library/parallel/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/parallel/src/init.c -o init.o
making init.d from ../../../../../../R-3.4-branch/src/library/parallel/src/init.c
making fork.d from ../../../../../../R-3.4-branch/src/library/parallel/src/fork.c
making rngstream.d from ../../../../../../R-3.4-branch/src/library/parallel/src/rngstream.c
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/parallel/src/rngstream.c -o rngstream.o
clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.4-branch/src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.4-branch/src/library/parallel/src/fork.c -o fork.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/parallel/libs
byte-compiling package 'parallel'
installing parsed NAMESPACE files
make[1]: Nothing to be done for `R'.
you should 'make docs' now ...
configuring Java ...
Java interpreter : /usr/bin/java
Java version     : 9.0.4
Java home path   : /Library/Java/JavaVirtualMachines/jdk-9.jdk/Contents/Home
Java compiler    : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar
Non-system Java on macOS
creating doc/NEWS.pdf
creating doc/NEWS

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/darwin
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I/Library/Java/JavaVirtualMachines/jdk-9.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/jdk-9.jdk/Contents/Home/include/darwin  -I/usr/local/include   -fPIC  -Wall -g -O2  -c conftest.c -o conftest.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o conftest.so conftest.o -L/Library/Java/JavaVirtualMachines/jdk-9.jdk/Contents/Home/lib/server -ljvm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation


JAVA_HOME        : /Library/Java/JavaVirtualMachines/jdk-9.jdk/Contents/Home
Java library path: $(JAVA_HOME)/lib/server
JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/darwin
JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Updating Java configuration in /Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch
Done.

creating doc/manual/version.texi
creating doc/manual/R-FAQ.html
mkdir ../../doc/manual/images
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-admin.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
installing parsed Rd
  datasets
  grid
  grDevices
  tcltk
  splines
  graphics
  compiler
  methods
  stats4
  tools
  parallel
  utils
  stats
  base
building/updating package metadata ...
writing package indices
begin installing recommended package foreign
begin installing recommended package lattice
begin installing recommended package MASS
begin installing recommended package codetools
begin installing recommended package KernSmooth
begin installing recommended package rpart
begin installing recommended package nnet
begin installing recommended package spatial
* installing *source* package 'codetools' ...
** package 'codetools' successfully unpacked and MD5 sums checked
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (codetools)
* installing *source* package 'nnet' ...
** package 'nnet' successfully unpacked and MD5 sums checked
** libs
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c nnet.c -o nnet.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o nnet.so nnet.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/nnet/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (nnet)
* installing *source* package 'spatial' ...
** package 'spatial' successfully unpacked and MD5 sums checked
** libs
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c krc.c -o krc.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pps.c -o pps.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o spatial.so init.o krc.o pps.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/spatial/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (spatial)
* installing *source* package 'KernSmooth' ...
** package 'KernSmooth' successfully unpacked and MD5 sums checked
** libs
gfortran   -fPIC  -g -O2  -c blkest.f -o blkest.o
gfortran   -fPIC  -g -O2  -c cp.f -o cp.o
gfortran   -fPIC  -g -O2  -c dgedi.f -o dgedi.o
gfortran   -fPIC  -g -O2  -c dgefa.f -o dgefa.o
gfortran   -fPIC  -g -O2  -c dgesl.f -o dgesl.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
gfortran   -fPIC  -g -O2  -c linbin.f -o linbin.o
gfortran   -fPIC  -g -O2  -c linbin2D.f -o linbin2D.o
gfortran   -fPIC  -g -O2  -c locpoly.f -o locpoly.o
gfortran   -fPIC  -g -O2  -c rlbin.f -o rlbin.o
gfortran   -fPIC  -g -O2  -c sdiag.f -o sdiag.o
gfortran   -fPIC  -g -O2  -c sstdiag.f -o sstdiag.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/KernSmooth/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KernSmooth)
* installing *source* package 'foreign' ...
** package 'foreign' successfully unpacked and MD5 sums checked
** libs
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_systat.c -o R_systat.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rdbfread.c -o Rdbfread.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rdbfwrite.c -o Rdbfwrite.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c SASxport.c -o SASxport.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c avl.c -o avl.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c dbfopen.c -o dbfopen.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c file-handle.c -o file-handle.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c format.c -o format.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c minitab.c -o minitab.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pfm-read.c -o pfm-read.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c sfm-read.c -o sfm-read.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c spss.c -o spss.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c stataread.c -o stataread.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/foreign/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (foreign)
* installing *source* package 'rpart' ...
** package 'rpart' successfully unpacked and MD5 sums checked
** libs
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c anova.c -o anova.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c anovapred.c -o anovapred.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c branch.c -o branch.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c bsplit.c -o bsplit.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c choose_surg.c -o choose_surg.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c fix_cp.c -o fix_cp.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c free_tree.c -o free_tree.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c gini.c -o gini.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c graycode.c -o graycode.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c insert_split.c -o insert_split.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c make_cp_list.c -o make_cp_list.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c make_cp_table.c -o make_cp_table.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c mysort.c -o mysort.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c nodesplit.c -o nodesplit.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c partition.c -o partition.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c poisson.c -o poisson.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pred_rpart.c -o pred_rpart.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c print_tree.c -o print_tree.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rpart.c -o rpart.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rpart_callback.c -o rpart_callback.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rpartexp.c -o rpartexp.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rpartexp2.c -o rpartexp2.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rpcountup.c -o rpcountup.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rpmatrix.c -o rpmatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rundown.c -o rundown.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rundown2.c -o rundown2.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c surrogate.c -o surrogate.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c usersplit.c -o usersplit.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c xpred.c -o xpred.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c xval.c -o xval.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/rpart/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rpart)
* installing *source* package 'MASS' ...
** package 'MASS' successfully unpacked and MD5 sums checked
** libs
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c MASS.c -o MASS.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c lqs.c -o lqs.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o MASS.so MASS.o lqs.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/MASS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (MASS)
begin installing recommended package cluster
begin installing recommended package class
* installing *source* package 'lattice' ...
** package 'lattice' successfully unpacked and MD5 sums checked
** libs
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c threeDplot.c -o threeDplot.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o lattice.so init.o threeDplot.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/lattice/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (lattice)
begin installing recommended package Matrix
begin installing recommended package nlme
* installing *source* package 'class' ...
** package 'class' successfully unpacked and MD5 sums checked
** libs
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c class.c -o class.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o class.so class.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/class/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (class)
* installing *source* package 'cluster' ...
** package 'cluster' successfully unpacked and MD5 sums checked
** libs
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c clara.c -o clara.o
gfortran   -fPIC  -g -O2  -c daisy.f -o daisy.o
gfortran   -fPIC  -g -O2  -c dysta.f -o dysta.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c fanny.c -o fanny.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c mona.c -o mona.o
mona.c:249:21: warning: variable 'lcc' is used uninitialized whenever 'for' loop exits because its condition is false [-Wsometimes-uninitialized]
                for (int lbb = k; lbb <= kb; ++lbb) {
                                  ^~~~~~~~~
mona.c:257:28: note: uninitialized use occurs here
                for (int laa = k; laa <= lcc; ++laa) {
                                         ^~~
mona.c:249:21: note: remove the condition if it is always true
                for (int lbb = k; lbb <= kb; ++lbb) {
                                  ^~~~~~~~~
mona.c:248:10: note: initialize the variable 'lcc' to silence this warning
                int lcc, nelbb;
                       ^
                        = 0
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pam.c -o pam.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c sildist.c -o sildist.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c spannel.c -o spannel.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c twins.c -o twins.o
1 warning generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/cluster/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (cluster)
* installing *source* package 'nlme' ...
** package 'nlme' successfully unpacked and MD5 sums checked
** libs
gfortran   -fPIC  -g -O2  -c chol.f -o chol.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c corStruct.c -o corStruct.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c gnls.c -o gnls.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c matrix.c -o matrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c nlOptimizer.c -o nlOptimizer.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c nlme.c -o nlme.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c nlmefit.c -o nlmefit.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pdMat.c -o pdMat.o
gfortran   -fPIC  -g -O2  -c rs.f -o rs.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o rs.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/nlme/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (nlme)
* installing *source* package 'Matrix' ...
** package 'Matrix' successfully unpacked and MD5 sums checked
** libs
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c CHMfactor.c -o CHMfactor.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c Csparse.c -o Csparse.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c TMatrix_as.c -o TMatrix_as.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c Tsparse.c -o Tsparse.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c Mutils.c -o Mutils.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c chm_common.c -o chm_common.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c cs.c -o cs.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c cs_utils.c -o cs_utils.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dense.c -o dense.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dgCMatrix.c -o dgCMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dgTMatrix.c -o dgTMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dgeMatrix.c -o dgeMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dpoMatrix.c -o dpoMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dppMatrix.c -o dppMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dsCMatrix.c -o dsCMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dsyMatrix.c -o dsyMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dspMatrix.c -o dspMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dtCMatrix.c -o dtCMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dtTMatrix.c -o dtTMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dtrMatrix.c -o dtrMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dtpMatrix.c -o dtpMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c factorizations.c -o factorizations.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ldense.c -o ldense.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c lgCMatrix.c -o lgCMatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c sparseQR.c -o sparseQR.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c abIndex.c -o abIndex.o
( cd Lib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean )
( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean )
( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean )
( cd Lib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -f "/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/etc/Makeconf" -f Makefile )
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_aat.c -o cholmod_aat.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_add.c -o cholmod_add.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_band.c -o cholmod_band.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_common.c -o cholmod_common.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_complex.c -o cholmod_complex.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_copy.c -o cholmod_copy.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_dense.c -o cholmod_dense.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_error.c -o cholmod_error.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_factor.c -o cholmod_factor.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_memory.c -o cholmod_memory.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_sparse.c -o cholmod_sparse.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_transpose.c -o cholmod_transpose.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_triplet.c -o cholmod_triplet.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_version.c -o cholmod_version.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Check/cholmod_check.c -o cholmod_check.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Check/cholmod_read.c -o cholmod_read.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Check/cholmod_write.c -o cholmod_write.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Modify/cholmod_updown.c -o cholmod_updown.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_aat.c -o cholmod_l_aat.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_add.c -o cholmod_l_add.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_band.c -o cholmod_l_band.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_common.c -o cholmod_l_common.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_complex.c -o cholmod_l_complex.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_copy.c -o cholmod_l_copy.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_dense.c -o cholmod_l_dense.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_error.c -o cholmod_l_error.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_factor.c -o cholmod_l_factor.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_memory.c -o cholmod_l_memory.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_sparse.c -o cholmod_l_sparse.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_transpose.c -o cholmod_l_transpose.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_triplet.c -o cholmod_l_triplet.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_version.c -o cholmod_l_version.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Check/cholmod_check.c -o cholmod_l_check.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Check/cholmod_read.c -o cholmod_l_read.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Check/cholmod_write.c -o cholmod_l_write.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_updown.c -o cholmod_l_updown.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o
ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o  cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o 
( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -f "/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/etc/Makeconf" -f Makefile lib )
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c colamd_global.c -o colamd_global.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -c colamd.c -o colamd.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c colamd.c -o colamd_l.o
ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o
( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -f "/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/etc/Makeconf" -f Makefile lib )
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_1.c -o amd_i_1.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_1.c -o amd_l_1.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_2.c -o amd_i_2.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_2.c -o amd_l_2.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_order.c -o amd_i_order.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_order.c -o amd_l_order.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_control.c -o amd_i_control.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_control.c -o amd_l_control.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_info.c -o amd_i_info.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_info.c -o amd_l_info.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_global.c -o amd_i_global.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_global.c -o amd_l_global.o
ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o 
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../../AMD.a(amd_i_dump.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../../AMD.a(amd_l_dump.o) has no symbols
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG -DNTIMER  -I/usr/local/include   -fPIC  -Wall -g -O2  -c SuiteSparse_config.c -o SuiteSparse_config.o
ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lRlapack -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/Matrix/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'chol2inv' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix'
Creating a generic function for 'diag' from package 'base' in package 'Matrix'
Creating a generic function for 'drop' from package 'base' in package 'Matrix'
Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix'
Creating a generic function for 'unname' from package 'base' in package 'Matrix'
Creating a generic function for 'norm' from package 'base' in package 'Matrix'
Creating a generic function for 'rcond' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'rcond' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc"
Creating a generic function for 'colSums' from package 'base' in package 'Matrix'
Creating a generic function for 'colMeans' from package 'base' in package 'Matrix'
Creating a generic function for 'rowSums' from package 'base' in package 'Matrix'
Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix'
in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix'
Creating a generic function for 'diag<-' from package 'base' in package 'Matrix'
Creating a generic function for 'crossprod' from package 'base' in package 'Matrix'
Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix'
Creating a generic function for 'which' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM"
in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph"
in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph"
in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL"
in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL"
Creating a generic function for 'qr.R' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix'
Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix'
** help
*** installing help indices
** building package indices
Loading required package: Matrix
** installing vignettes
** testing if installed package can be loaded
* DONE (Matrix)
begin installing recommended package survival
begin installing recommended package mgcv
* installing *source* package 'survival' ...
** package 'survival' successfully unpacked and MD5 sums checked
** libs
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c agexact.c -o agexact.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c agfit4.c -o agfit4.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c agfit5.c -o agfit5.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c agmart.c -o agmart.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c agmart2.c -o agmart2.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c agmart3.c -o agmart3.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c agscore.c -o agscore.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c agsurv3.c -o agsurv3.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c agsurv4.c -o agsurv4.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c agsurv5.c -o agsurv5.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c chinv2.c -o chinv2.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c chinv3.c -o chinv3.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c cholesky2.c -o cholesky2.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c cholesky3.c -o cholesky3.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c chsolve2.c -o chsolve2.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c chsolve3.c -o chsolve3.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c concordance1.c -o concordance1.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c cox_Rcallback.c -o cox_Rcallback.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxcount1.c -o coxcount1.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxdetail.c -o coxdetail.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxexact.c -o coxexact.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxfit5.c -o coxfit5.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxfit6.c -o coxfit6.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxmart.c -o coxmart.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxmart2.c -o coxmart2.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxph_wtest.c -o coxph_wtest.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxsafe.c -o coxsafe.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxscho.c -o coxscho.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxscore.c -o coxscore.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c dmatrix.c -o dmatrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c doloop.c -o doloop.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c finegray.c -o finegray.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pyears1.c -o pyears1.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pyears2.c -o pyears2.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pyears3b.c -o pyears3b.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pystep.c -o pystep.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c survConcordance.c -o survConcordance.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c survdiff2.c -o survdiff2.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c survfit4.c -o survfit4.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c survfitci.c -o survfitci.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c survpenal.c -o survpenal.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c survreg6.c -o survreg6.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c survreg7.c -o survreg7.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c survregc1.c -o survregc1.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c survregc2.c -o survregc2.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c survsplit.c -o survsplit.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c tmerge.c -o tmerge.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart2.o agmart3.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o concordance1.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o finegray.o init.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/survival/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (survival)
begin installing recommended package boot
* installing *source* package 'boot' ...
** package 'boot' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (boot)
* installing *source* package 'mgcv' ...
** package 'mgcv' successfully unpacked and MD5 sums checked
** libs
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c coxph.c -o coxph.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c discrete.c -o discrete.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c gdi.c -o gdi.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c magic.c -o magic.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c mat.c -o mat.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c matrix.c -o matrix.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c mgcv.c -o mgcv.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c misc.c -o misc.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c mvn.c -o mvn.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c qp.c -o qp.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c soap.c -o soap.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c sparse-smooth.c -o sparse-smooth.o
clang -I/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/include -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c tprs.c -o tprs.o
sparse-smooth.c:768:17: warning: unused variable 'dis' [-Wunused-variable]
  double *X,*x,*dis,*r,*xx,*ddat;
                ^
1 warning generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -L/usr/local/lib -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lRlapack -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -fopenmp -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.4-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.4-branch/library/mgcv/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (mgcv)
building/updating vignettes for package 'grid' ...

processing 'displaylist.Rnw'
processing 'frame.Rnw'
processing 'grid.Rnw'
processing 'grobs.Rnw'
processing 'interactive.Rnw'
processing 'locndimn.Rnw'
processing 'moveline.Rnw'
processing 'nonfinite.Rnw'
processing 'plotexample.Rnw'
processing 'rotated.Rnw'
processing 'saveload.Rnw'
processing 'sharing.Rnw'
processing 'viewports.Rnw'
building/updating vignettes for package 'parallel' ...

processing 'parallel.Rnw'
building/updating vignettes for package 'utils' ...

processing 'Sweave.Rnw'

[[system return code 0x0]]