Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
  comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK
Testing examples for package 'graphics'
  comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK
Testing examples for package 'stats'
  comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... OK
Testing examples for package 'datasets'
  comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
Testing examples for package 'grid'
  comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
  comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
  comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
Testing examples for package 'parallel'
running strict specific tests
running code in '../../../R-3.6-branch/tests/eval-etc.R' ... OK
  comparing 'eval-etc.Rout' to '../../../R-3.6-branch/tests/eval-etc.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/simple-true.R' ... OK
  comparing 'simple-true.Rout' to '../../../R-3.6-branch/tests/simple-true.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/arith-true.R' ... OK
  comparing 'arith-true.Rout' to '../../../R-3.6-branch/tests/arith-true.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/arith.R' ... OK
  comparing 'arith.Rout' to '../../../R-3.6-branch/tests/arith.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/lm-tests.R' ... OK
  comparing 'lm-tests.Rout' to '../../../R-3.6-branch/tests/lm-tests.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/ok-errors.R' ... OK
  comparing 'ok-errors.Rout' to '../../../R-3.6-branch/tests/ok-errors.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/method-dispatch.R' ... OK
  comparing 'method-dispatch.Rout' to '../../../R-3.6-branch/tests/method-dispatch.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/any-all.R' ... OK
  comparing 'any-all.Rout' to '../../../R-3.6-branch/tests/any-all.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/d-p-q-r-tests.R' ... OK
  comparing 'd-p-q-r-tests.Rout' to '../../../R-3.6-branch/tests/d-p-q-r-tests.Rout.save' ... OK
running sloppy specific tests
running code in '../../../R-3.6-branch/tests/complex.R' ... OK
  comparing 'complex.Rout' to '../../../R-3.6-branch/tests/complex.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/eval-etc-2.R' ... OK
  comparing 'eval-etc-2.Rout' to '../../../R-3.6-branch/tests/eval-etc-2.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/print-tests.R' ... OK
  comparing 'print-tests.Rout' to '../../../R-3.6-branch/tests/print-tests.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/lapack.R' ... OK
  comparing 'lapack.Rout' to '../../../R-3.6-branch/tests/lapack.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/datasets.R' ... OK
  comparing 'datasets.Rout' to '../../../R-3.6-branch/tests/datasets.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/datetime.R' ... OK
  comparing 'datetime.Rout' to '../../../R-3.6-branch/tests/datetime.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/iec60559.R' ... OK
  comparing 'iec60559.Rout' to '../../../R-3.6-branch/tests/iec60559.Rout.save' ... OK
checking Sys.timezone ...
running code in '../../../R-3.6-branch/tests/timezone.R' ... OK
running regression tests ...
running code in '../../../R-3.6-branch/tests/array-subset.R' ... OK
running code in '../../../R-3.6-branch/tests/reg-tests-1a.R' ... OK
running code in '../../../R-3.6-branch/tests/reg-tests-1b.R' ... OK
running code in '../../../R-3.6-branch/tests/reg-tests-1c.R' ... OK
running code in '../../../R-3.6-branch/tests/reg-tests-1d.R' ... OK
running code in '../../../R-3.6-branch/tests/reg-tests-2.R' ... OK
  comparing 'reg-tests-2.Rout' to '../../../R-3.6-branch/tests/reg-tests-2.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/reg-examples1.R' ... OK
running code in '../../../R-3.6-branch/tests/reg-examples2.R' ... OK
running code in '../../../R-3.6-branch/tests/reg-packages.R' ... OK
running code in '../../../R-3.6-branch/tests/p-qbeta-strict-tst.R' ... OK
running code in '../../../R-3.6-branch/tests/r-strict-tst.R' ... OK
running code in '../../../R-3.6-branch/tests/reg-IO.R' ... OK
  comparing 'reg-IO.Rout' to '../../../R-3.6-branch/tests/reg-IO.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/reg-IO2.R' ... OK
  comparing 'reg-IO2.Rout' to '../../../R-3.6-branch/tests/reg-IO2.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/reg-plot.R' ... OK
  comparing 'reg-plot.pdf' to '../../../R-3.6-branch/tests/reg-plot.pdf.save' ... OK
running code in '../../../R-3.6-branch/tests/reg-S4-examples.R' ... OK
running code in '../../../R-3.6-branch/tests/reg-BLAS.R' ... OK
running code in '../../../R-3.6-branch/tests/reg-tests-3.R' ... OK
  comparing 'reg-tests-3.Rout' to '../../../R-3.6-branch/tests/reg-tests-3.Rout.save' ... OK
running code in '../../../R-3.6-branch/tests/reg-examples3.R' ... OK
  comparing 'reg-examples3.Rout' to '../../../R-3.6-branch/tests/reg-examples3.Rout.save' ... OK
running tests of plotting Latin-1
  expect failure or some differences if not in a Latin-1 or UTF-8 locale
running code in '../../../R-3.6-branch/tests/reg-plot-latin1.R' ... FAILED
running code in '../../../R-3.6-branch/tests/reg-S4.R' ... OK
  comparing 'reg-S4.Rout' to '../../../R-3.6-branch/tests/reg-S4.Rout.save' ... OK
running tests of Internet functions
running code in '../../../R-3.6-branch/tests/internet.R' ... OK
  comparing 'internet.Rout' to '../../../R-3.6-branch/tests/internet.Rout.save' ... OK

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checking wchar.h usability... yes
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Configuring src/extra/intl directory
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checking whether the inttypes.h PRIxNN macros are broken... no
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checking if the linker (/usr/bin/ld) is GNU ld... no
checking for shared library run path origin... done
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checking for argz_count... no
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checking for __fsetlocking... no
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... no
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... no
checking for bison... bison
checking version of bison... 2.3, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
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checking whether printf() supports POSIX/XSI format strings... yes
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checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
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checking for CFPreferencesCopyAppValue... yes
checking for CFLocaleCopyCurrent... yes
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
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checking for asprintf... yes
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checking for putenv... (cached) yes
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checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) yes
checking for CFLocaleCopyCurrent... (cached) yes
checking whether included gettext is requested... no
checking for GNU gettext in libc... no
checking for GNU gettext in libintl... no
checking whether to use NLS... yes
checking where the gettext function comes from... included intl directory
Finished configuring src/extra/intl directory

checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/sh
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
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config.status: creating tests/Examples/Makefile
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config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for x86_64-apple-darwin15.6.0

  Source directory:            ../../R-3.6-branch
  Installation directory:      /Library/Frameworks

  C compiler:                  clang  -Wall -g -O2
  Fortran fixed-form compiler: gfortran  -Wall -g -O2

  Default C++ compiler:        clang++ -std=gnu++11  -Wall -g -O2
  C++98 compiler:              clang++ -std=gnu++98  -Wall -g -O2
  C++11 compiler:              clang++ -std=gnu++11  -Wall -g -O2
  C++14 compiler:              clang++ -std=gnu++14  -Wall -g -O2
  C++17 compiler:              clang++ -std=gnu++17  -Wall -g -O2
  Fortran free-form compiler:  gfortran  -Wall -g -O2
  Obj-C compiler:	       clang -Wall -g -O2 -fobjc-exceptions

  Interfaces supported:        X11, aqua, tcltk
  External libraries:          readline, curl
  Additional capabilities:     PNG, JPEG, TIFF, NLS, cairo, ICU
  Options enabled:             framework, shared BLAS, R profiling, memory profiling

  Capabilities skipped:        
  Options not enabled:         

  Recommended packages:        yes


[[system return code 0x0]]

creating RESOURCES
creating FAQ
creating doc/html/resources.html
make[1]: Nothing to be done for `R'.
make[1]: Nothing to be done for `R'.
make[2]: Nothing to be done for `R'.
mkdir ../share/R
mkdir ../share/dictionaries
mkdir ../share/encodings
mkdir ../share/java
mkdir ../share/licenses
mkdir ../share/make
mkdir ../share/Rd
mkdir ../share/Rd/macros
mkdir ../share/sh
mkdir ../share/texmf
mkdir ../share/texmf/bibtex
mkdir ../share/texmf/bibtex/bib
mkdir ../share/texmf/bibtex/bst
mkdir ../share/texmf/tex
mkdir ../share/texmf/tex/latex
creating src/scripts/R.fe
mkdir ../../bin
mkdir ../../include
mkdir ../../../include/R_ext
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../R-3.6-branch/src/extra/blas/blas.f -o blas.o
making localtime.d from ../../../../../R-3.6-branch/src/extra/tzone/localtime.c
making strftime.d from ../../../../../R-3.6-branch/src/extra/tzone/strftime.c
making regcomp.d from ../../../../../R-3.6-branch/src/extra/tre/regcomp.c
making regerror.d from ../../../../../R-3.6-branch/src/extra/tre/regerror.c
making regexec.d from ../../../../../R-3.6-branch/src/extra/tre/regexec.c
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f -o cmplxblas.o
making bindtextdom.d from ../../../../../R-3.6-branch/src/extra/intl/bindtextdom.c
making tre-ast.d from ../../../../../R-3.6-branch/src/extra/tre/tre-ast.c
making tre-compile.d from ../../../../../R-3.6-branch/src/extra/tre/tre-compile.c
making tre-match-approx.d from ../../../../../R-3.6-branch/src/extra/tre/tre-match-approx.c
making dcgettext.d from ../../../../../R-3.6-branch/src/extra/intl/dcgettext.c
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/tzone -I../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H  -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tzone/localtime.c -o localtime.o
making dgettext.d from ../../../../../R-3.6-branch/src/extra/intl/dgettext.c
making gettext.d from ../../../../../R-3.6-branch/src/extra/intl/gettext.c
making tre-match-backtrack.d from ../../../../../R-3.6-branch/src/extra/tre/tre-match-backtrack.c
making tre-match-parallel.d from ../../../../../R-3.6-branch/src/extra/tre/tre-match-parallel.c
making tre-mem.d from ../../../../../R-3.6-branch/src/extra/tre/tre-mem.c
making finddomain.d from ../../../../../R-3.6-branch/src/extra/intl/finddomain.c
making loadmsgcat.d from ../../../../../R-3.6-branch/src/extra/intl/loadmsgcat.c

../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:4796:26:

                   RTEMP = RTEMP + DCONJG( A( L, J ) )*A( L, J )
                          1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:4808:26:

                   RTEMP = RTEMP + DCONJG( A( L, J ) )*A( L, J )
                          1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
making tre-parse.d from ../../../../../R-3.6-branch/src/extra/tre/tre-parse.c
making tre-stack.d from ../../../../../R-3.6-branch/src/extra/tre/tre-stack.c
making xmalloc.d from ../../../../../R-3.6-branch/src/extra/tre/xmalloc.c
making textdomain.d from ../../../../../R-3.6-branch/src/extra/intl/textdomain.c
making l10nflist.d from ../../../../../R-3.6-branch/src/extra/intl/l10nflist.c
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/tzone -I../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H  -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tzone/strftime.c -o strftime.o
making explodename.d from ../../../../../R-3.6-branch/src/extra/intl/explodename.c
making dcigettext.d from ../../../../../R-3.6-branch/src/extra/intl/dcigettext.c
clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tre/regcomp.c -o regcomp.o
making dcngettext.d from ../../../../../R-3.6-branch/src/extra/intl/dcngettext.c
making dngettext.d from ../../../../../R-3.6-branch/src/extra/intl/dngettext.c
making ngettext.d from ../../../../../R-3.6-branch/src/extra/intl/ngettext.c
making plural.d from ../../../../../R-3.6-branch/src/extra/intl/plural.c
making plural-exp.d from ../../../../../R-3.6-branch/src/extra/intl/plural-exp.c
making langprefs.d from ../../../../../R-3.6-branch/src/extra/intl/langprefs.c
making localcharset.d from ../../../../../R-3.6-branch/src/extra/intl/localcharset.c
clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tre/regerror.c -o regerror.o
making localename.d from ../../../../../R-3.6-branch/src/extra/intl/localename.c
making printf.d from ../../../../../R-3.6-branch/src/extra/intl/printf.c
making osdep.d from ../../../../../R-3.6-branch/src/extra/intl/osdep.c
making intl-compat.d from ../../../../../R-3.6-branch/src/extra/intl/intl-compat.c
clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tre/regexec.c -o regexec.o
clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tre/tre-ast.c -o tre-ast.o
making hash-string.d from ../../../../../R-3.6-branch/src/extra/intl/hash-string.c
making lock.d from ../../../../../R-3.6-branch/src/extra/intl/lock.c
clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tre/tre-compile.c -o tre-compile.o
clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tre/tre-match-approx.c -o tre-match-approx.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/bindtextdom.c -o bindtextdom.o
clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tre/tre-match-backtrack.c -o tre-match-backtrack.o
clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tre/tre-match-parallel.c -o tre-match-parallel.o
ar -cr libtz.a localtime.o strftime.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/dcgettext.c -o dcgettext.o
clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tre/tre-mem.c -o tre-mem.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/dgettext.c -o dgettext.o
clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tre/tre-parse.c -o tre-parse.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/gettext.c -o gettext.o

../../../../../R-3.6-branch/src/extra/blas/blas.f:1614:0:

                DH22=DH22*GAM
 
Warning: 'dh22' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/blas.f:1613:0:

                DH21=DH21*GAM
 
Warning: 'dh21' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/blas.f:1591:0:

                DH12=DH12*GAM
 
Warning: 'dh12' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/blas.f:1590:0:

                DH11=DH11*GAM
 
Warning: 'dh11' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:1130:0:

       INTEGER            I, INFO, IX, IY, J, JX, JY, KX, KY
 
Warning: 'ky' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:1130:0: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:1130:0: Warning: 'jy' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:1130:0: Warning: 'jx' may be used uninitialized in this function [-Wmaybe-uninitialized]
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/finddomain.c -o finddomain.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/loadmsgcat.c -o loadmsgcat.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/textdomain.c -o textdomain.o

../../../../../R-3.6-branch/src/extra/blas/blas.f:2409:0:

       INTEGER            I, INFO, IX, J, JX, K, KK, KX
 
Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/l10nflist.c -o l10nflist.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/explodename.c -o explodename.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/dcigettext.c -o dcigettext.o
clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tre/tre-stack.c -o tre-stack.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/dcngettext.c -o dcngettext.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/dngettext.c -o dngettext.o
clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tre/xmalloc.c -o xmalloc.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/ngettext.c -o ngettext.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/plural.c -o plural.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/plural-exp.c -o plural-exp.o

../../../../../R-3.6-branch/src/extra/blas/blas.f:3451:0:

       INTEGER            I, INFO, IX, J, JX, KX
 
Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/langprefs.c -o langprefs.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/localcharset.c -o localcharset.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/localename.c -o localename.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/printf.c -o printf.o
ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o

../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:2208:0:

       INTEGER            I, INFO, IX, J, JX, KX
 
Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
ranlib libtre.a
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/osdep.c -o osdep.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/intl-compat.c -o intl-compat.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/hash-string.c -o hash-string.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/intl/lock.c -o lock.o
ar -cr libintl.a bindtextdom.o dcgettext.o dgettext.o gettext.o finddomain.o loadmsgcat.o textdomain.o l10nflist.o explodename.o dcigettext.o dcngettext.o dngettext.o ngettext.o plural.o plural-exp.o langprefs.o localcharset.o localename.o printf.o osdep.o intl-compat.o hash-string.o lock.o

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(printf.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(osdep.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(lock.o) has no symbols
ranlib libintl.a

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(printf.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(osdep.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(lock.o) has no symbols
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:2946:0:

       INTEGER            I, INFO, IX, J, JX, KX
 
Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:4386:0:

       INTEGER            I, INFO, IX, J, JX, KX
 
Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:5195:0:

       INTEGER            I, INFO, IX, J, JX, K, KK, KX
 
Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:5423:0:

       INTEGER            I, INFO, IX, IY, J, JX, JY, K, KK, KX, KY
 
Warning: 'ky' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:5423:0: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:5423:0: Warning: 'jy' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:5423:0: Warning: 'jx' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:6649:0:

       INTEGER            I, INFO, IX, J, JX, KPLUS1, KX, L
 
Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:7030:0:

       INTEGER            I, INFO, IX, J, JX, KPLUS1, KX, L
 
Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:7367:0:

       INTEGER            I, INFO, IX, J, JX, K, KK, KX
 
Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:7708:0:

       INTEGER            I, INFO, IX, J, JX, K, KK, KX
 
Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -o libRblas.dylib blas.o  cmplxblas.o -install_name libRblas.dylib -headerpad_max_install_names -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm
mkdir /Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib
making integrate.d from ../../../../R-3.6-branch/src/appl/integrate.c
making interv.d from ../../../../R-3.6-branch/src/appl/interv.c
making maxcol.d from ../../../../R-3.6-branch/src/appl/maxcol.c
making optim.d from ../../../../R-3.6-branch/src/appl/optim.c
making pretty.d from ../../../../R-3.6-branch/src/appl/pretty.c
making uncmin.d from ../../../../R-3.6-branch/src/appl/uncmin.c
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/integrate.c -o integrate.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/interv.c -o interv.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/maxcol.c -o maxcol.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/optim.c -o optim.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/pretty.c -o pretty.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/uncmin.c -o uncmin.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dchdc.f -o dchdc.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dpbfa.f -o dpbfa.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dpbsl.f -o dpbsl.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dpoco.f -o dpoco.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dpodi.f -o dpodi.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dpofa.f -o dpofa.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dposl.f -o dposl.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dqrdc.f -o dqrdc.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dqrdc2.f -o dqrdc2.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dqrls.f -o dqrls.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dqrsl.f -o dqrsl.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dqrutl.f -o dqrutl.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dsvdc.f -o dsvdc.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dtrco.f -o dtrco.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/appl/dtrsl.f -o dtrsl.o
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
ranlib libappl.a
making mlutils.d from ../../../../R-3.6-branch/src/nmath/mlutils.c
making d1mach.d from ../../../../R-3.6-branch/src/nmath/d1mach.c
making fmin2.d from ../../../../R-3.6-branch/src/nmath/fmin2.c
making i1mach.d from ../../../../R-3.6-branch/src/nmath/i1mach.c
making fmax2.d from ../../../../R-3.6-branch/src/nmath/fmax2.c
making fround.d from ../../../../R-3.6-branch/src/nmath/fround.c
making fprec.d from ../../../../R-3.6-branch/src/nmath/fprec.c
making ftrunc.d from ../../../../R-3.6-branch/src/nmath/ftrunc.c
making sign.d from ../../../../R-3.6-branch/src/nmath/sign.c
making imax2.d from ../../../../R-3.6-branch/src/nmath/imax2.c
making fsign.d from ../../../../R-3.6-branch/src/nmath/fsign.c
making chebyshev.d from ../../../../R-3.6-branch/src/nmath/chebyshev.c
making imin2.d from ../../../../R-3.6-branch/src/nmath/imin2.c
making log1p.d from ../../../../R-3.6-branch/src/nmath/log1p.c
making lgammacor.d from ../../../../R-3.6-branch/src/nmath/lgammacor.c
making gammalims.d from ../../../../R-3.6-branch/src/nmath/gammalims.c
making stirlerr.d from ../../../../R-3.6-branch/src/nmath/stirlerr.c
making bd0.d from ../../../../R-3.6-branch/src/nmath/bd0.c
making gamma.d from ../../../../R-3.6-branch/src/nmath/gamma.c
making gamma_cody.d from ../../../../R-3.6-branch/src/nmath/gamma_cody.c
making lgamma.d from ../../../../R-3.6-branch/src/nmath/lgamma.c
making lbeta.d from ../../../../R-3.6-branch/src/nmath/lbeta.c
making beta.d from ../../../../R-3.6-branch/src/nmath/beta.c
making polygamma.d from ../../../../R-3.6-branch/src/nmath/polygamma.c
making cospi.d from ../../../../R-3.6-branch/src/nmath/cospi.c
making bessel_i.d from ../../../../R-3.6-branch/src/nmath/bessel_i.c
making bessel_k.d from ../../../../R-3.6-branch/src/nmath/bessel_k.c
making bessel_j.d from ../../../../R-3.6-branch/src/nmath/bessel_j.c
making choose.d from ../../../../R-3.6-branch/src/nmath/choose.c
making bessel_y.d from ../../../../R-3.6-branch/src/nmath/bessel_y.c
making snorm.d from ../../../../R-3.6-branch/src/nmath/snorm.c
making sexp.d from ../../../../R-3.6-branch/src/nmath/sexp.c
making pgamma.d from ../../../../R-3.6-branch/src/nmath/pgamma.c
making dgamma.d from ../../../../R-3.6-branch/src/nmath/dgamma.c
making qgamma.d from ../../../../R-3.6-branch/src/nmath/qgamma.c
making rgamma.d from ../../../../R-3.6-branch/src/nmath/rgamma.c
making dbeta.d from ../../../../R-3.6-branch/src/nmath/dbeta.c
making qbeta.d from ../../../../R-3.6-branch/src/nmath/qbeta.c
making pbeta.d from ../../../../R-3.6-branch/src/nmath/pbeta.c
making rbeta.d from ../../../../R-3.6-branch/src/nmath/rbeta.c
making dunif.d from ../../../../R-3.6-branch/src/nmath/dunif.c
making punif.d from ../../../../R-3.6-branch/src/nmath/punif.c
making qunif.d from ../../../../R-3.6-branch/src/nmath/qunif.c
making runif.d from ../../../../R-3.6-branch/src/nmath/runif.c
making pnorm.d from ../../../../R-3.6-branch/src/nmath/pnorm.c
making dnorm.d from ../../../../R-3.6-branch/src/nmath/dnorm.c
making qnorm.d from ../../../../R-3.6-branch/src/nmath/qnorm.c
making rnorm.d from ../../../../R-3.6-branch/src/nmath/rnorm.c
making plnorm.d from ../../../../R-3.6-branch/src/nmath/plnorm.c
making dlnorm.d from ../../../../R-3.6-branch/src/nmath/dlnorm.c
making qlnorm.d from ../../../../R-3.6-branch/src/nmath/qlnorm.c
making rlnorm.d from ../../../../R-3.6-branch/src/nmath/rlnorm.c
making pf.d from ../../../../R-3.6-branch/src/nmath/pf.c
making df.d from ../../../../R-3.6-branch/src/nmath/df.c
making qf.d from ../../../../R-3.6-branch/src/nmath/qf.c
making rf.d from ../../../../R-3.6-branch/src/nmath/rf.c
making dnf.d from ../../../../R-3.6-branch/src/nmath/dnf.c
making dt.d from ../../../../R-3.6-branch/src/nmath/dt.c
making pt.d from ../../../../R-3.6-branch/src/nmath/pt.c
making qt.d from ../../../../R-3.6-branch/src/nmath/qt.c
making rt.d from ../../../../R-3.6-branch/src/nmath/rt.c
making dnt.d from ../../../../R-3.6-branch/src/nmath/dnt.c
making dchisq.d from ../../../../R-3.6-branch/src/nmath/dchisq.c
making pchisq.d from ../../../../R-3.6-branch/src/nmath/pchisq.c
making qchisq.d from ../../../../R-3.6-branch/src/nmath/qchisq.c
making rchisq.d from ../../../../R-3.6-branch/src/nmath/rchisq.c
making rnchisq.d from ../../../../R-3.6-branch/src/nmath/rnchisq.c
making dbinom.d from ../../../../R-3.6-branch/src/nmath/dbinom.c
making pbinom.d from ../../../../R-3.6-branch/src/nmath/pbinom.c
making rbinom.d from ../../../../R-3.6-branch/src/nmath/rbinom.c
making qbinom.d from ../../../../R-3.6-branch/src/nmath/qbinom.c
making rmultinom.d from ../../../../R-3.6-branch/src/nmath/rmultinom.c
making dcauchy.d from ../../../../R-3.6-branch/src/nmath/dcauchy.c
making pcauchy.d from ../../../../R-3.6-branch/src/nmath/pcauchy.c
making rcauchy.d from ../../../../R-3.6-branch/src/nmath/rcauchy.c
making dexp.d from ../../../../R-3.6-branch/src/nmath/dexp.c
making qcauchy.d from ../../../../R-3.6-branch/src/nmath/qcauchy.c
making pexp.d from ../../../../R-3.6-branch/src/nmath/pexp.c
making qexp.d from ../../../../R-3.6-branch/src/nmath/qexp.c
making rexp.d from ../../../../R-3.6-branch/src/nmath/rexp.c
making dgeom.d from ../../../../R-3.6-branch/src/nmath/dgeom.c
making qgeom.d from ../../../../R-3.6-branch/src/nmath/qgeom.c
making pgeom.d from ../../../../R-3.6-branch/src/nmath/pgeom.c
making rgeom.d from ../../../../R-3.6-branch/src/nmath/rgeom.c
making dhyper.d from ../../../../R-3.6-branch/src/nmath/dhyper.c
making phyper.d from ../../../../R-3.6-branch/src/nmath/phyper.c
making qhyper.d from ../../../../R-3.6-branch/src/nmath/qhyper.c
making rhyper.d from ../../../../R-3.6-branch/src/nmath/rhyper.c
making dnbinom.d from ../../../../R-3.6-branch/src/nmath/dnbinom.c
making pnbinom.d from ../../../../R-3.6-branch/src/nmath/pnbinom.c
making dpois.d from ../../../../R-3.6-branch/src/nmath/dpois.c
making rnbinom.d from ../../../../R-3.6-branch/src/nmath/rnbinom.c
making qnbinom.d from ../../../../R-3.6-branch/src/nmath/qnbinom.c
making ppois.d from ../../../../R-3.6-branch/src/nmath/ppois.c
making qpois.d from ../../../../R-3.6-branch/src/nmath/qpois.c
making rpois.d from ../../../../R-3.6-branch/src/nmath/rpois.c
making dweibull.d from ../../../../R-3.6-branch/src/nmath/dweibull.c
making pweibull.d from ../../../../R-3.6-branch/src/nmath/pweibull.c
making qweibull.d from ../../../../R-3.6-branch/src/nmath/qweibull.c
making dlogis.d from ../../../../R-3.6-branch/src/nmath/dlogis.c
making rweibull.d from ../../../../R-3.6-branch/src/nmath/rweibull.c
making plogis.d from ../../../../R-3.6-branch/src/nmath/plogis.c
making qlogis.d from ../../../../R-3.6-branch/src/nmath/qlogis.c
making rlogis.d from ../../../../R-3.6-branch/src/nmath/rlogis.c
making dnchisq.d from ../../../../R-3.6-branch/src/nmath/dnchisq.c
making dnbeta.d from ../../../../R-3.6-branch/src/nmath/dnbeta.c
making qnchisq.d from ../../../../R-3.6-branch/src/nmath/qnchisq.c
making pnchisq.d from ../../../../R-3.6-branch/src/nmath/pnchisq.c
making qnbeta.d from ../../../../R-3.6-branch/src/nmath/qnbeta.c
making pnbeta.d from ../../../../R-3.6-branch/src/nmath/pnbeta.c
making pnf.d from ../../../../R-3.6-branch/src/nmath/pnf.c
making pnt.d from ../../../../R-3.6-branch/src/nmath/pnt.c
making qnf.d from ../../../../R-3.6-branch/src/nmath/qnf.c
making qnt.d from ../../../../R-3.6-branch/src/nmath/qnt.c
making ptukey.d from ../../../../R-3.6-branch/src/nmath/ptukey.c
making qtukey.d from ../../../../R-3.6-branch/src/nmath/qtukey.c
making toms708.d from ../../../../R-3.6-branch/src/nmath/toms708.c
making wilcox.d from ../../../../R-3.6-branch/src/nmath/wilcox.c
making signrank.d from ../../../../R-3.6-branch/src/nmath/signrank.c
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/mlutils.c -o mlutils.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/d1mach.c -o d1mach.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/i1mach.c -o i1mach.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/fmax2.c -o fmax2.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/fmin2.c -o fmin2.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/fprec.c -o fprec.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/fround.c -o fround.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/ftrunc.c -o ftrunc.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/sign.c -o sign.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/fsign.c -o fsign.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/imax2.c -o imax2.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/imin2.c -o imin2.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/chebyshev.c -o chebyshev.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/log1p.c -o log1p.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/lgammacor.c -o lgammacor.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/gammalims.c -o gammalims.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/stirlerr.c -o stirlerr.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/bd0.c -o bd0.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/gamma.c -o gamma.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/lgamma.c -o lgamma.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/gamma_cody.c -o gamma_cody.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/beta.c -o beta.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/lbeta.c -o lbeta.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/polygamma.c -o polygamma.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/cospi.c -o cospi.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/bessel_i.c -o bessel_i.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/bessel_j.c -o bessel_j.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/bessel_k.c -o bessel_k.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/bessel_y.c -o bessel_y.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/choose.c -o choose.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/snorm.c -o snorm.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/sexp.c -o sexp.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dgamma.c -o dgamma.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pgamma.c -o pgamma.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qgamma.c -o qgamma.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rgamma.c -o rgamma.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dbeta.c -o dbeta.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pbeta.c -o pbeta.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qbeta.c -o qbeta.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rbeta.c -o rbeta.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dunif.c -o dunif.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/punif.c -o punif.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qunif.c -o qunif.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/runif.c -o runif.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dnorm.c -o dnorm.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pnorm.c -o pnorm.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qnorm.c -o qnorm.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rnorm.c -o rnorm.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dlnorm.c -o dlnorm.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/plnorm.c -o plnorm.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qlnorm.c -o qlnorm.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rlnorm.c -o rlnorm.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/df.c -o df.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pf.c -o pf.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qf.c -o qf.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rf.c -o rf.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dnf.c -o dnf.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dt.c -o dt.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pt.c -o pt.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qt.c -o qt.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rt.c -o rt.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dnt.c -o dnt.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dchisq.c -o dchisq.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pchisq.c -o pchisq.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qchisq.c -o qchisq.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rchisq.c -o rchisq.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rnchisq.c -o rnchisq.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dbinom.c -o dbinom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pbinom.c -o pbinom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qbinom.c -o qbinom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rbinom.c -o rbinom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rmultinom.c -o rmultinom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dcauchy.c -o dcauchy.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pcauchy.c -o pcauchy.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qcauchy.c -o qcauchy.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rcauchy.c -o rcauchy.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dexp.c -o dexp.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pexp.c -o pexp.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qexp.c -o qexp.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rexp.c -o rexp.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dgeom.c -o dgeom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pgeom.c -o pgeom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qgeom.c -o qgeom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rgeom.c -o rgeom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dhyper.c -o dhyper.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/phyper.c -o phyper.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qhyper.c -o qhyper.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rhyper.c -o rhyper.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dnbinom.c -o dnbinom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pnbinom.c -o pnbinom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qnbinom.c -o qnbinom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rnbinom.c -o rnbinom.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dpois.c -o dpois.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/ppois.c -o ppois.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qpois.c -o qpois.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rpois.c -o rpois.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dweibull.c -o dweibull.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pweibull.c -o pweibull.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qweibull.c -o qweibull.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rweibull.c -o rweibull.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dlogis.c -o dlogis.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/plogis.c -o plogis.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qlogis.c -o qlogis.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/rlogis.c -o rlogis.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dnchisq.c -o dnchisq.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pnchisq.c -o pnchisq.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qnchisq.c -o qnchisq.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/dnbeta.c -o dnbeta.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pnbeta.c -o pnbeta.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qnbeta.c -o qnbeta.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pnf.c -o pnf.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/pnt.c -o pnt.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qnf.c -o qnf.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qnt.c -o qnt.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/ptukey.c -o ptukey.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/qtukey.c -o qtukey.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/toms708.c -o toms708.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/wilcox.c -o wilcox.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/nmath/signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(mlutils.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(log1p.o) has no symbols
ranlib libnmath.a

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(mlutils.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(log1p.o) has no symbols
config.status: creating src/unix/Makefile
making Rembedded.d from ../../../../R-3.6-branch/src/unix/Rembedded.c
making dynload.d from ../../../../R-3.6-branch/src/unix/dynload.c
making system.d from ../../../../R-3.6-branch/src/unix/system.c
making sys-unix.d from ../../../../R-3.6-branch/src/unix/sys-unix.c
making X11.d from ../../../../R-3.6-branch/src/unix/X11.c
making sys-std.d from ../../../../R-3.6-branch/src/unix/sys-std.c
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/unix/Rembedded.c -o Rembedded.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/unix/dynload.c -o dynload.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/unix/system.c -o system.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/unix/sys-unix.c -o sys-unix.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/unix/sys-std.c -o sys-std.o
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/unix/X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H    -Wall -g -O2  -L/usr/local/lib -DR_HOME='"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch"' \
	  -o Rscript ../../../../R-3.6-branch/src/unix/Rscript.c
config.status: creating src/main/Makefile
making CommandLineArgs.d from ../../../../R-3.6-branch/src/main/CommandLineArgs.c
making Rdynload.d from ../../../../R-3.6-branch/src/main/Rdynload.c
making Renviron.d from ../../../../R-3.6-branch/src/main/Renviron.c
making RNG.d from ../../../../R-3.6-branch/src/main/RNG.c
making agrep.d from ../../../../R-3.6-branch/src/main/agrep.c
making altrep.d from ../../../../R-3.6-branch/src/main/altrep.c
making altclasses.d from ../../../../R-3.6-branch/src/main/altclasses.c
making apply.d from ../../../../R-3.6-branch/src/main/apply.c
making arithmetic.d from ../../../../R-3.6-branch/src/main/arithmetic.c
making array.d from ../../../../R-3.6-branch/src/main/array.c
making attrib.d from ../../../../R-3.6-branch/src/main/attrib.c
making bind.d from ../../../../R-3.6-branch/src/main/bind.c
making character.d from ../../../../R-3.6-branch/src/main/character.c
making builtin.d from ../../../../R-3.6-branch/src/main/builtin.c
making coerce.d from ../../../../R-3.6-branch/src/main/coerce.c
making colors.d from ../../../../R-3.6-branch/src/main/colors.c
making complex.d from ../../../../R-3.6-branch/src/main/complex.c
making connections.d from ../../../../R-3.6-branch/src/main/connections.c
making cum.d from ../../../../R-3.6-branch/src/main/cum.c
making context.d from ../../../../R-3.6-branch/src/main/context.c
making dcf.d from ../../../../R-3.6-branch/src/main/dcf.c
making datetime.d from ../../../../R-3.6-branch/src/main/datetime.c
making debug.d from ../../../../R-3.6-branch/src/main/debug.c
making deparse.d from ../../../../R-3.6-branch/src/main/deparse.c
making devices.d from ../../../../R-3.6-branch/src/main/devices.c
making dotcode.d from ../../../../R-3.6-branch/src/main/dotcode.c
making dounzip.d from ../../../../R-3.6-branch/src/main/dounzip.c
making dstruct.d from ../../../../R-3.6-branch/src/main/dstruct.c
making duplicate.d from ../../../../R-3.6-branch/src/main/duplicate.c
making edit.d from ../../../../R-3.6-branch/src/main/edit.c
making engine.d from ../../../../R-3.6-branch/src/main/engine.c
making envir.d from ../../../../R-3.6-branch/src/main/envir.c
making errors.d from ../../../../R-3.6-branch/src/main/errors.c
making eval.d from ../../../../R-3.6-branch/src/main/eval.c
making format.d from ../../../../R-3.6-branch/src/main/format.c
making gevents.d from ../../../../R-3.6-branch/src/main/gevents.c
making gram.d from ../../../../R-3.6-branch/src/main/gram.c
making gram-ex.d from ../../../../R-3.6-branch/src/main/gram-ex.c
making graphics.d from ../../../../R-3.6-branch/src/main/graphics.c
making grep.d from ../../../../R-3.6-branch/src/main/grep.c
making identical.d from ../../../../R-3.6-branch/src/main/identical.c
making inlined.d from ../../../../R-3.6-branch/src/main/inlined.c
making inspect.d from ../../../../R-3.6-branch/src/main/inspect.c
making internet.d from ../../../../R-3.6-branch/src/main/internet.c
making iosupport.d from ../../../../R-3.6-branch/src/main/iosupport.c
making lapack.d from ../../../../R-3.6-branch/src/main/lapack.c
making list.d from ../../../../R-3.6-branch/src/main/list.c
making localecharset.d from ../../../../R-3.6-branch/src/main/localecharset.c
making logic.d from ../../../../R-3.6-branch/src/main/logic.c
making main.d from ../../../../R-3.6-branch/src/main/main.c
making mapply.d from ../../../../R-3.6-branch/src/main/mapply.c
making match.d from ../../../../R-3.6-branch/src/main/match.c
making memory.d from ../../../../R-3.6-branch/src/main/memory.c
making names.d from ../../../../R-3.6-branch/src/main/names.c
making objects.d from ../../../../R-3.6-branch/src/main/objects.c
making options.d from ../../../../R-3.6-branch/src/main/options.c
making paste.d from ../../../../R-3.6-branch/src/main/paste.c
making platform.d from ../../../../R-3.6-branch/src/main/platform.c
making plot.d from ../../../../R-3.6-branch/src/main/plot.c
making plot3d.d from ../../../../R-3.6-branch/src/main/plot3d.c
making plotmath.d from ../../../../R-3.6-branch/src/main/plotmath.c
making print.d from ../../../../R-3.6-branch/src/main/print.c
making printarray.d from ../../../../R-3.6-branch/src/main/printarray.c
making printvector.d from ../../../../R-3.6-branch/src/main/printvector.c
making printutils.d from ../../../../R-3.6-branch/src/main/printutils.c
making qsort.d from ../../../../R-3.6-branch/src/main/qsort.c
making radixsort.d from ../../../../R-3.6-branch/src/main/radixsort.c
making random.d from ../../../../R-3.6-branch/src/main/random.c
making raw.d from ../../../../R-3.6-branch/src/main/raw.c
making registration.d from ../../../../R-3.6-branch/src/main/registration.c
making relop.d from ../../../../R-3.6-branch/src/main/relop.c
making rlocale.d from ../../../../R-3.6-branch/src/main/rlocale.c
making saveload.d from ../../../../R-3.6-branch/src/main/saveload.c
making scan.d from ../../../../R-3.6-branch/src/main/scan.c
making seq.d from ../../../../R-3.6-branch/src/main/seq.c
making serialize.d from ../../../../R-3.6-branch/src/main/serialize.c
making sort.d from ../../../../R-3.6-branch/src/main/sort.c
making source.d from ../../../../R-3.6-branch/src/main/source.c
making split.d from ../../../../R-3.6-branch/src/main/split.c
making sprintf.d from ../../../../R-3.6-branch/src/main/sprintf.c
making startup.d from ../../../../R-3.6-branch/src/main/startup.c
making subassign.d from ../../../../R-3.6-branch/src/main/subassign.c
making subscript.d from ../../../../R-3.6-branch/src/main/subscript.c
making subset.d from ../../../../R-3.6-branch/src/main/subset.c
making summary.d from ../../../../R-3.6-branch/src/main/summary.c
making sysutils.d from ../../../../R-3.6-branch/src/main/sysutils.c
making times.d from ../../../../R-3.6-branch/src/main/times.c
making unique.d from ../../../../R-3.6-branch/src/main/unique.c
making util.d from ../../../../R-3.6-branch/src/main/util.c
making version.d from ../../../../R-3.6-branch/src/main/version.c
making g_alab_her.d from ../../../../R-3.6-branch/src/main/g_alab_her.c
making g_cntrlify.d from ../../../../R-3.6-branch/src/main/g_cntrlify.c
making g_fontdb.d from ../../../../R-3.6-branch/src/main/g_fontdb.c
making g_her_glyph.d from ../../../../R-3.6-branch/src/main/g_her_glyph.c
making Rmain.d from ../../../../R-3.6-branch/src/main/Rmain.c
making alloca.d from ../../../../R-3.6-branch/src/main/alloca.c
making mkdtemp.d from ../../../../R-3.6-branch/src/main/mkdtemp.c
making strncasecmp.d from ../../../../R-3.6-branch/src/main/strncasecmp.c
making strdup.d from ../../../../R-3.6-branch/src/main/strdup.c
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/CommandLineArgs.c -o CommandLineArgs.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/Rdynload.c -o Rdynload.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/Renviron.c -o Renviron.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/RNG.c -o RNG.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/agrep.c -o agrep.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/altclasses.c -o altclasses.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/altrep.c -o altrep.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/apply.c -o apply.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/arithmetic.c -o arithmetic.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/array.c -o array.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/attrib.c -o attrib.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/bind.c -o bind.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/builtin.c -o builtin.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/character.c -o character.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/coerce.c -o coerce.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/colors.c -o colors.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/complex.c -o complex.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/connections.c -o connections.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/context.c -o context.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/cum.c -o cum.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/dcf.c -o dcf.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/datetime.c -o datetime.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/debug.c -o debug.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/deparse.c -o deparse.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/devices.c -o devices.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/dotcode.c -o dotcode.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/dounzip.c -o dounzip.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/dstruct.c -o dstruct.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/duplicate.c -o duplicate.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/edit.c -o edit.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/engine.c -o engine.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/envir.c -o envir.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/errors.c -o errors.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/eval.c -o eval.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/format.c -o format.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/gevents.c -o gevents.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/gram.c -o gram.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/gram-ex.c -o gram-ex.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/graphics.c -o graphics.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/grep.c -o grep.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/identical.c -o identical.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/inlined.c -o inlined.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/inspect.c -o inspect.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/internet.c -o internet.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/iosupport.c -o iosupport.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/lapack.c -o lapack.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/list.c -o list.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/localecharset.c -o localecharset.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/logic.c -o logic.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/main.c -o main.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/mapply.c -o mapply.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/match.c -o match.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/memory.c -o memory.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/names.c -o names.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/objects.c -o objects.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/options.c -o options.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/paste.c -o paste.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/platform.c -o platform.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/plot.c -o plot.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/plot3d.c -o plot3d.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/plotmath.c -o plotmath.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/print.c -o print.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/printarray.c -o printarray.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/printvector.c -o printvector.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/printutils.c -o printutils.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/qsort.c -o qsort.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/radixsort.c -o radixsort.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/random.c -o random.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/raw.c -o raw.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/registration.c -o registration.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/relop.c -o relop.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/rlocale.c -o rlocale.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/saveload.c -o saveload.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/scan.c -o scan.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/seq.c -o seq.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/serialize.c -o serialize.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/sort.c -o sort.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/source.c -o source.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/split.c -o split.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/sprintf.c -o sprintf.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/startup.c -o startup.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/subassign.c -o subassign.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/subscript.c -o subscript.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/subset.c -o subset.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/summary.c -o summary.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/sysutils.c -o sysutils.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/times.c -o times.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/unique.c -o unique.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/util.c -o util.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/version.c -o version.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/g_alab_her.c -o g_alab_her.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/g_cntrlify.c -o g_cntrlify.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/g_fontdb.c -o g_fontdb.o
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/g_her_glyph.c -o g_her_glyph.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/xxxpr.f -o xxxpr.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -install_name libR.dylib -compatibility_version 3.6.0  -current_version 3.6.3  -headerpad_max_install_names -o libR.dylib CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a  ../extra/intl/libintl.a ../extra/tzone/libtz.a -L"../../lib" -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm    -Wl,-framework -Wl,CoreFoundation -lreadline  -L/usr/local/lib -lpcre2-8 -lpcre -llzma -lbz2 -lz -licucore -ldl -lm -liconv  
mkdir /Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/bin/exec
clang -I../../../../R-3.6-branch/src/extra  -I. -I../../src/include -I../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.6-branch/src/main/Rmain.c -o Rmain.o
clang -fopenmp  -L"../../lib" -L/usr/local/lib -o R.bin Rmain.o  -lR -lRblas
making Rhttpd.d from ../../../../../R-3.6-branch/src/modules/internet/Rhttpd.c
making Rsock.d from ../../../../../R-3.6-branch/src/modules/internet/Rsock.c
making internet.d from ../../../../../R-3.6-branch/src/modules/internet/internet.c
making libcurl.d from ../../../../../R-3.6-branch/src/modules/internet/libcurl.c
making devX11.d from ../../../../../R-3.6-branch/src/modules/X11/devX11.c
making Lapack.d from ../../../../../R-3.6-branch/src/modules/lapack/Lapack.c
making nanoftp.d from ../../../../../R-3.6-branch/src/modules/internet/nanoftp.c
making nanohttp.d from ../../../../../R-3.6-branch/src/modules/internet/nanohttp.c
making rotated.d from ../../../../../R-3.6-branch/src/modules/X11/rotated.c
making sock.d from ../../../../../R-3.6-branch/src/modules/internet/sock.c
making rbitmap.d from ../../../../../R-3.6-branch/src/modules/X11/rbitmap.c
making sockconn.d from ../../../../../R-3.6-branch/src/modules/internet/sockconn.c
gfortran -fPIC  -Wall -g -O2 -msse2 -mfpmath=sse -c ../../../../../R-3.6-branch/src/modules/lapack/dlamch.f -o dlamch.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f -o dlapack.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f -o cmplx.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.6-branch/src/modules/internet/Rhttpd.c -o Rhttpd.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.6-branch/src/modules/internet/Rsock.c -o Rsock.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.6-branch/src/modules/internet/internet.c -o internet.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.6-branch/src/modules/internet/libcurl.c -o libcurl.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.6-branch/src/modules/internet/nanoftp.c -o nanoftp.o
clang -I/opt/X11/include/libpng16  -I/usr/local/include  -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.6-branch/src/library/grDevices/src/cairo -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.6-branch/src/modules/X11/devX11.c -o devX11.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.6-branch/src/modules/internet/nanohttp.c -o nanohttp.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.6-branch/src/modules/internet/sock.c -o sock.o
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.6-branch/src/modules/internet/sockconn.c -o sockconn.o
clang -I/opt/X11/include/libpng16  -I/usr/local/include  -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.6-branch/src/library/grDevices/src/cairo -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.6-branch/src/modules/X11/rotated.c -o rotated.o
clang -I/opt/X11/include/libpng16  -I/usr/local/include  -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.6-branch/src/library/grDevices/src/cairo -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.6-branch/src/modules/X11/rbitmap.c -o rbitmap.o
clang -I/opt/X11/include/libpng16  -I/usr/local/include  -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.6-branch/src/library/grDevices/src/cairo -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.6-branch/src/modules/X11/dataentry.c -o dataentry.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../lib" -L/usr/local/lib -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR   -Wl,-framework -Wl,CoreFoundation
mkdir /Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/modules
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../lib" -L/usr/local/lib -o R_X11.so devX11.o rotated.o rbitmap.o -L/usr/local/lib -ltiff  -ljpeg -L/opt/X11/lib -lpng16  -lSM -lICE -L/opt/X11/lib -lz -lcairo -lz -lpixman-1 -lfontconfig -lexpat -lfreetype -lz -lbz2 -lpng16 -lz -lxcb-shm -lX11-xcb -lxcb-render -lXrender -lXext -lX11 -lxcb -lXau -lXdmcp  -L/opt/X11/lib -lX11 -lXt -lXmu  -lR   -Wl,-framework -Wl,CoreFoundation

../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:1780:19:

                K = SCALE( I )
                   1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:1794:19:

                K = SCALE( I )
                   1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:2456:21:

             D( I ) = ALPHA
                     1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:2475:24:

                E( I ) = ALPHA
                        1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:2500:21:

             D( I ) = ALPHA
                     1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:2519:24:

                E( I ) = ALPHA
                        1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:21724:21:

             D( I ) = ALPHA
                     1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:21764:24:

                E( I ) = ALPHA
                        1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:21808:21:

             D( I ) = ALPHA
                     1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:21842:24:

                E( I ) = ALPHA
                        1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:3759:21:

             HSWORK = WORK( 1 )
                     1
Warning: Possible change of value in conversion from COMPLEX(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:51010:18:

          LWKOPT = WORK( 1 )
                  1
Warning: Possible change of value in conversion from COMPLEX(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:18896:18:

          W( 1 ) = A( 1, 1 )
                  1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:38222:26:

                E( I-1 ) = ALPHA
                          1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:38276:24:

                E( I ) = ALPHA
                        1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:20030:24:

                D( J ) = A( J, J )
                        1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19616:21:

             E( I ) = ALPHA
                     1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19644:23:

             D( I+1 ) = A( I+1, I+1 )
                       1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19647:18:

          D( 1 ) = A( 1, 1 )
                  1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19660:21:

             E( I ) = ALPHA
                     1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19689:21:

             D( I ) = A( I, I )
                     1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19692:18:

          D( N ) = A( N, N )
                  1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:20062:24:

                D( J ) = A( J, J )
                        1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19287:18:

          W( 1 ) = A( 1, 1 )
                  1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:39440:18:

             AII = A( I, I )
                  1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:39459:18:

             AII = A( I, I )
                  1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:39881:18:

             AJJ = DBLE( A( J, J ) ) - ZDOTC( J-1, A( 1, J ), 1,
                  1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:39908:18:

             AJJ = DBLE( A( J, J ) ) - ZDOTC( J-1, A( J, 1 ), LDA,
                  1
Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion]
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../lib" -L/usr/local/lib -o R_de.so dataentry.o -lSM -lICE -L/opt/X11/lib -lz -lcairo -lz -lpixman-1 -lfontconfig -lexpat -lfreetype -lz -lbz2 -lpng16 -lz -lxcb-shm -lX11-xcb -lxcb-render -lXrender -lXext -lX11 -lxcb -lXau -lXdmcp  -L/opt/X11/lib -lX11 -lXt -lXmu  -lR   -Wl,-framework -Wl,CoreFoundation

../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:42313:0:

       INTEGER            I, INFO, IX, J, JX, KX
 
Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:42941:0:

      $            CALL ZSWAP( N-KP, A( KP+1, KK ), 1, A( KP+1, KP ), 1 )
 
Warning: 'imax' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:23899:0:

       INTEGER            I, IMAX, J, JLAM, JMAX, JP, K2, N1, N1P1, N2
 
Warning: 'jlam' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:28093:0:

       DOUBLE PRECISION   SUM, VALUE
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:27577:0:

       DOUBLE PRECISION   ABSA, SUM, VALUE
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:27345:0:

       DOUBLE PRECISION   SUM, VALUE, TEMP
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:15060:0:

          A( N, N ) = DCMPLX( SMIN, ZERO )
 
Warning: 'smin' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:15042:0:

      $      CALL ZSWAP( N, A( 1, JPV ), 1, A( 1, I ), 1 )
 
Warning: 'jpv' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:15036:0:

      $      CALL ZSWAP( N, A( IPV, 1 ), LDA, A( I, 1 ), LDA )
 
Warning: 'ipv' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:6965:19:

                K = SCALE( I )
                   1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:6979:19:

                K = SCALE( I )
                   1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:9255:21:

             HSWORK = WORK( 1 )
                     1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:9870:21:

             HSWORK = WORK( 1 )
                     1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16900:28:

                LWORK_DGEQRF=DUM(1)
                            1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16904:28:

                LWORK_DORMQR=DUM(1)
                            1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16919:28:

                LWORK_DGEBRD=DUM(1)
                            1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16923:28:

                LWORK_DORMBR=DUM(1)
                            1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98805:18:

          LWKOPT = WORK( 1 )
                  1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16927:28:

                LWORK_DORGBR=DUM(1)
                            1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16951:31:

                   LWORK_DGELQF=DUM(1)
                               1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16955:31:

                   LWORK_DGEBRD=DUM(1)
                               1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16959:31:

                   LWORK_DORMBR=DUM(1)
                               1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16963:31:

                   LWORK_DORGBR=DUM(1)
                               1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16967:31:

                   LWORK_DORMLQ=DUM(1)
                               1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16987:31:

                   LWORK_DGEBRD=DUM(1)
                               1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16991:31:

                   LWORK_DORMBR=DUM(1)
                               1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16995:31:

                   LWORK_DORGBR=DUM(1)
                               1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:36578:13:

       LOPT = WORK( 1 )
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:35520:13:

       LOPT = WORK( M+NP+1 )
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:36876:13:

       LOPT = WORK( 1 )
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:36224:13:

       LOPT = WORK( P+MN+1 )
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:124474:14:

       LWMIN = MAX( DBLE( LWMIN ), DBLE( WORK( 1 ) ) )
              1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:124475:15:

       LIWMIN = MAX( DBLE( LIWMIN ), DBLE( IWORK( 1 ) ) )
               1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:137193:13:

       LOPT = MAX( DBLE( LOPT ), DBLE( WORK( 1 ) ) )
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:137194:14:

       LIOPT = MAX( DBLE( LIOPT ), DBLE( IWORK( 1 ) ) )
              1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:138372:21:

             LWKOPT = WORK(1)
                     1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:78161:34:

       SUBROUTINE DLARRV( N, VL, VU, D, L, PIVMIN,
                                  1
Warning: Unused dummy argument 'vu' at (1) [-Wunused-dummy-argument]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:74644:54:

       SUBROUTINE DLARRC( JOBT, N, VL, VU, D, E, PIVMIN,
                                                      1
Warning: Unused dummy argument 'pivmin' at (1) [-Wunused-dummy-argument]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46417:45:

      $                   RELTOL, PIVMIN, D, E, E2, NVAL, AB, C, MOUT,
                                             1
Warning: Unused dummy argument 'e' at (1) [-Wunused-dummy-argument]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:58843:55:

       INTEGER FUNCTION DLANEG( N, D, LLD, SIGMA, PIVMIN, R )
                                                       1
Warning: Unused dummy argument 'pivmin' at (1) [-Wunused-dummy-argument]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:27841:0:

       DOUBLE PRECISION   SUM, VALUE
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
SRC/iparam2stage.F:612:68:

Warning: Unused dummy argument 'lwork' at (1) [-Wunused-dummy-argument]
SRC/iparam2stage.F:612:51:

Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument]
SRC/iparam2stage.F:612:48:

Warning: Unused dummy argument 'opts' at (1) [-Wunused-dummy-argument]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:20932:0:

             IF( ILZ )
 
Warning: 'ilz' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:20874:0:

             IF( ILQ ) THEN
 
Warning: 'ilq' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:20926:0:

             IF( ILSCHR ) THEN
 
Warning: 'ilschr' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:129267:23:

      $           ABSTOL, M, W, Z, LDZ, ISUPPZ, WORK, LWORK, IWORK,
                       1
Warning: Unused dummy argument 'abstol' at (1) [-Wunused-dummy-argument]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:25730:0:

      $                            DIFRJ ) / ( POLES( I, 2 )+DJ )
 
Warning: 'difrj' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:24670:0:

      $         CALL ZSCAL( I2-I, DCONJG( TEMP ), H( I, I+1 ), LDH )
 
Warning: 'i2' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:25007:0:

       A( K+NB, NB ) = EI
 
Warning: 'IMAGPART_EXPR ' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:25007:0: Warning: 'REALPART_EXPR ' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:47052:0:

                SCALE = SCALE2
 
Warning: 'scale2' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:95440:0:

                   X( J ) = X( J ) / TJJS - SUMJ
 
Warning: 'tjjs' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:49130:0:

       ELSE IF( LWORK.LT.LWMIN .AND. .NOT.LQUERY ) THEN
 
Warning: 'lwmin' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:55339:0:

          IF( LWORK.LT.NW*NB+TSIZE ) THEN
 
Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:94315:0:

                   X( J ) = X( J ) / TJJS - SUMJ
 
Warning: 'tjjs' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:52056:0:

       IF( NB.GT.1 .AND. NB.LT.K ) THEN
 
Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:93199:0:

                   X( J ) = X( J ) / TJJS - SUMJ
 
Warning: 'tjjs' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:139859:0:

      $            CALL DSWAP( N-KP, A( KP+1, KK ), 1, A( KP+1, KP ), 1 )
 
Warning: 'imax' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:4925:0:

          DO 40 I = ILO, IHI - 1 - NX, NB
 
Warning: 'nx' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:61481:0:

       DOUBLE PRECISION   ANORM, SCALE, SUM
 
Warning: 'anorm' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:126791:0:

                DO 80 J = KK + 1, KP - 1
 
Warning: 'imax' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:6427:0:

          IF( M.GE.MNTHR ) THEN
 
Warning: 'mnthr' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:11909:0:

                      IF( LWORK.GE.WRKBL+LDA*N ) THEN
 
Warning: 'wrkbl' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:11192:0:

          IF( M.GE.MNTHR ) THEN
 
Warning: 'mnthr' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:14676:0:

                ROWCND = MAX( RCMIN, SMLNUM ) / MIN( RCMAX, BIGNUM )
 
Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:14676:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:155330:0:

      $                     AP( JCLAST ), AP( JC+1 ), 1 )
 
Warning: 'jclast' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:52847:0:

       IF( NB.GT.1 .AND. NB.LT.K ) THEN
 
Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:80191:0:

       ISEED( 4 ) = IT4
 
Warning: 'it4' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:80190:0:

       ISEED( 3 ) = IT3
 
Warning: 'it3' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:80189:0:

       ISEED( 2 ) = IT2
 
Warning: 'it2' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:80188:0:

       ISEED( 1 ) = IT1
 
Warning: 'it1' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:129694:0:

             IF( ABS( XJ-XJM ).GT.ORTOL )
 
Warning: 'xjm' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:129694:0: Warning: 'ortol' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:129680:0:

      $            ABS( WORK( INDRV1+JMAX ) )
 
Warning: 'onenrm' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:129505:0:

       INTEGER            B1, BLKSIZ, BN, GPIND, I, IINFO, INDRV1,
 
Warning: 'gpind' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:129714:0:

             IF( NRM.LT.DTPCRT )
 
Warning: 'dtpcrt' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:62731:0:

       DOUBLE PRECISION   SUM, VALUE
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:62336:0:

       DOUBLE PRECISION   SUM, VALUE
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:61972:0:

       DOUBLE PRECISION   SUM, VALUE
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:61690:0:

       DOUBLE PRECISION   ABSA, SUM, VALUE
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:61213:0:

       DOUBLE PRECISION   ABSA, SUM, VALUE
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:59985:0:

       DOUBLE PRECISION   ABSA, SUM, VALUE
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:50542:0:

       INTEGER            I, IMAX, J, JLAM, JMAX, JP, K2, N1, N1P1, N2
 
Warning: 'jlam' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:49858:0:

      $   TAU = TAU*SCLINV
 
Warning: 'sclinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:47698:0:

      $                   N2, NJ, PJ
 
Warning: 'pj' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:59748:0:

       DOUBLE PRECISION   SUM, VALUE
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:59537:0:

       DOUBLE PRECISION   ANORM, SCALE, SUM, TEMP
 
Warning: 'anorm' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:59325:0:

       DOUBLE PRECISION   SUM, VALUE, TEMP
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:30198:0:

          A( N, N ) = SMIN
 
Warning: 'smin' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:30180:0:

      $      CALL DSWAP( N, A( 1, JPV ), 1, A( 1, I ), 1 )
 
Warning: 'jpv' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:30174:0:

      $      CALL DSWAP( N, A( IPV, 1 ), LDA, A( I, 1 ), LDA )
 
Warning: 'ipv' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:57445:0:

      $                           DIFRJ ) / ( POLES( I, 2 )+DJ )
 
Warning: 'difrj' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:43297:0:

             IF( ILZ ) THEN
 
Warning: 'ilz' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:43232:0:

             IF( ILQ ) THEN
 
Warning: 'ilq' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:43288:0:

             IF( ILSCHR ) THEN
 
Warning: 'ilschr' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:91527:0:

          IF( JPSV.NE.I )
 
Warning: 'jpsv' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:91521:0:

          IF( IPSV.NE.I ) THEN
 
Warning: 'ipsv' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:55334:0:

             IF( I2.GT.I )
 
Warning: 'i2' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:55662:0:

       A( K+NB, NB ) = EI
 
Warning: 'ei' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:160229:0:

          IF( LWORK.LT.LWMIN .AND. .NOT.LQUERY ) THEN
 
Warning: 'lwmin' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:160231:0:

          ELSE IF( LIWORK.LT.LIWMIN .AND. .NOT.LQUERY ) THEN
 
Warning: 'liwmin' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:59100:0:

       DOUBLE PRECISION   SUM, VALUE, TEMP
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:85479:0:

       INTEGER            I, IDXI, IDXJ, IDXJP, J, JP, JPREV, K2, M, N,
 
Warning: 'jprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:86073:0:

      $                   / ( DSIGMA( I )+DJ )
 
Warning: 'difrj' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:82631:0:

       INTEGER            CT, I, IDXI, IDXJ, IDXJP, J, JP, JPREV, K2, M,
 
Warning: 'jprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:89020:0:

       TAU = S
 
Warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
SRC/iparam2stage.F:770:0:

Warning: 'ns' may be used uninitialized in this function [-Wmaybe-uninitialized]
SRC/iparam2stage.F:761:0:

Warning: 'nh' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46944:0:

      $                   IGIVPT, INDXQ, IPERM, IPRMPT, IQ, IQPTR, IWREM,
 
Warning: 'iwrem' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46944:0: Warning: 'iqptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46944:0: Warning: 'iq' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46944:0: Warning: 'iprmpt' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46944:0: Warning: 'iperm' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46944:0: Warning: 'igivpt' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46943:0:

       INTEGER            CURLVL, CURPRB, CURR, I, IGIVCL, IGIVNM,
 
Warning: 'igivcl' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:103103:0:

          IF( LWORK.LT.NW*NB+TSIZE ) THEN
 
Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:99847:0:

       IF( NB.GT.1 .AND. NB.LT.K ) THEN
 
Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:135933:0:

       WORK( 1 ) = LWKOPT
 
Warning: 'lwkopt' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:75509:0:

                IF( W( JE ).GE.WUL .AND. IDISCU.GT.0 ) THEN
 
Warning: 'wul' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:75492:0:

                IF( W( JE ).LE.WLU .AND. IDISCL.GT.0 ) THEN
 
Warning: 'wlu' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:76030:0:

      $       ((IRANGE.EQ.VALRNG).AND.(D(1).GT.VL).AND.(D(1).LE.VU)).OR.
 
Warning: 'irange' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:76523:0:

          WBEGIN = WEND + 1
 
Warning: 'wend' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:76271:0:

          IF(MB.EQ.1) THEN
 
Warning: 'mb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:104360:0:

          IF( LWORK.LT.NW*NB+TSIZE ) THEN
 
Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:22255:0:

       IF( NB.GT.1 .AND. NB.LT.K ) THEN
 
Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:152534:0:

                SCALE = SCALE2
 
Warning: 'scale2' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:150826:0:

                   DIF( KS ) = COND
 
Warning: 'cond' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0:

      $                      WORK( WSTART ), IWORK, INFO )
 
Warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'poles' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'ivt' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'is' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'ic' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'givnum' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'givcol' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'difr' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'difl' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:104730:0:

          IF( LWORK.LT.NW*NB+TSIZE ) THEN
 
Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:163801:0:

       IF( NB.GT.1 .AND. NB.LT.M ) THEN
 
Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:13194:0:

          DO 40 I = ILO, IHI - 1 - NX, NB
 
Warning: 'nx' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:5484:0:

                ROWCND = MAX( RCMIN, SMLNUM ) / MIN( RCMAX, BIGNUM )
 
Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:5484:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:9798:0:

      $                   MAXWRK, MINWRK
 
Warning: 'maxwrk' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:17084:0:

          IF( M.GE.MNTHR ) THEN
 
Warning: 'mnthr' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:19000:0:

       IF( NB.GT.1 .AND. NB.LT.K ) THEN
 
Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:27727:0:

          IF( IE.LT.2 ) THEN
 
Warning: 'ie' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:25430:0:

                      ELSE IF( LWORK.GE.WRKBL+( LDA + N )*N ) THEN
 
Warning: 'wrkbl' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:24932:0:

          IF( M.GE.MNTHR ) THEN
 
Warning: 'mnthr' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:24492:0:

       INTEGER            BDSPAC, BLK, CHUNK, I, IE, IERR, IR, ISCL,
 
Warning: 'bdspac' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:29815:0:

                ROWCND = MAX( RCMIN, SMLNUM ) / MIN( RCMAX, BIGNUM )
 
Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:29815:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:55963:0:

       A( K+NB, NB ) = EI
 
Warning: 'ei' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:60344:0:

       DOUBLE PRECISION   SCALE, S, VALUE, AA, TEMP
 
Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98056:0:

      $             WORK(IORBDB), LORBDBWORK, CHILDINFO )
 
Warning: 'itauq2' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98056:0: Warning: 'itauq1' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98056:0: Warning: 'itaup2' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98056:0: Warning: 'itaup1' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98113:0:

      $                   WORK(IORGQR), LORGQRWORK, INFO )
 
Warning: 'iorgqr' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98090:0:

      $                      WORK(IORGLQ), LORGLQWORK, INFO )
 
Warning: 'iorglq' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98056:0:

      $             WORK(IORBDB), LORBDBWORK, CHILDINFO )
 
Warning: 'iorbdb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0:

      $             WORK(IB22E), WORK(IBBCSD), LBBCSDWORK, INFO )
 
Warning: 'ibbcsd' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib22e' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib22d' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib21e' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib21d' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib12e' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib12d' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib11e' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib11d' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:100635:0:

       IF( NB.GT.1 .AND. NB.LT.K ) THEN
 
Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:107059:0:

                SCOND = MAX( SMIN, SMLNUM ) / MIN( SMAX, BIGNUM )
 
Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:107059:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:110946:0:

                SCOND = MAX( SMIN, SMLNUM ) / MIN( SMAX, BIGNUM )
 
Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:110946:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:113627:0:

                SCOND = MAX( SMIN, SMLNUM ) / MIN( SMAX, BIGNUM )
 
Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:113627:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized]
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -o libRlapack.dylib dlamch.o dlapack.o cmplx.o  -install_name libRlapack.dylib -compatibility_version 3.6.0 -current_version 3.6.3  -headerpad_max_install_names -L"../../../lib" -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm  -L"../../../lib" -lR

ld: warning: could not create compact unwind for _dpbtrf_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _dhseqr_: stack subq instruction is too different from dwarf stack size
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.6-branch/src/modules/lapack/Lapack.c -o Lapack.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../lib" -L/usr/local/lib -o lapack.so  Lapack.o  -lR  -Wl,-framework -Wl,CoreFoundation -L"../../../lib" -lRlapack -L"../../../lib" -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm
/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib/libRlapack.dylib is unchanged
mkdir ../../library
building system startup profile
mkdir ../../../library/base
mkdir ../../../library/base/R
building package 'translations'
mkdir ../../../library/translations
building package 'base'
mkdir ../../../library/base/demo

mv: all.R: set owner/group (was: 501/0): Operation not permitted
building package 'tools'
mkdir ../../../library/tools
mkdir ../../../library/tools/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making text.d from ../../../../../../R-3.6-branch/src/library/tools/src/text.c
making init.d from ../../../../../../R-3.6-branch/src/library/tools/src/init.c
making Rmd5.d from ../../../../../../R-3.6-branch/src/library/tools/src/Rmd5.c
making md5.d from ../../../../../../R-3.6-branch/src/library/tools/src/md5.c
making install.d from ../../../../../../R-3.6-branch/src/library/tools/src/install.c
making signals.d from ../../../../../../R-3.6-branch/src/library/tools/src/signals.c
making getfmts.d from ../../../../../../R-3.6-branch/src/library/tools/src/getfmts.c
making http.d from ../../../../../../R-3.6-branch/src/library/tools/src/http.c
making gramLatex.d from ../../../../../../R-3.6-branch/src/library/tools/src/gramLatex.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tools/src/text.c -o text.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tools/src/init.c -o init.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tools/src/Rmd5.c -o Rmd5.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tools/src/md5.c -o md5.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tools/src/signals.c -o signals.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tools/src/install.c -o install.o
making gramRd.d from ../../../../../../R-3.6-branch/src/library/tools/src/gramRd.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tools/src/getfmts.c -o getfmts.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tools/src/http.c -o http.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tools/src/gramLatex.c -o gramLatex.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tools/src/gramRd.c -o gramRd.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/tools/libs
installing 'sysdata.rda'
building package 'compiler'
mkdir ../../../library/compiler
mkdir ../../../library/compiler/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
byte-compiling package 'compiler'
byte-compiling package 'base'
byte-compiling package 'tools'
building package 'utils'
mkdir ../../../library/utils
mkdir ../../../library/utils/doc
mkdir ../../../library/utils/R
mkdir ../../../library/utils/Sweave
mkdir ../../../library/utils/misc

mv: all.R: set owner/group (was: 501/0): Operation not permitted
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/utils/src/init.c -o init.o
making init.d from ../../../../../../R-3.6-branch/src/library/utils/src/init.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/utils/src/io.c -o io.o
making io.d from ../../../../../../R-3.6-branch/src/library/utils/src/io.c
making size.d from ../../../../../../R-3.6-branch/src/library/utils/src/size.c
making sock.d from ../../../../../../R-3.6-branch/src/library/utils/src/sock.c
making stubs.d from ../../../../../../R-3.6-branch/src/library/utils/src/stubs.c
making utils.d from ../../../../../../R-3.6-branch/src/library/utils/src/utils.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/utils/src/size.c -o size.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/utils/src/sock.c -o sock.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/utils/src/stubs.c -o stubs.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/utils/src/utils.c -o utils.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/utils/libs
installing 'sysdata.rda'
byte-compiling package 'utils'
building package 'grDevices'
mkdir ../../../library/grDevices
mkdir ../../../library/grDevices/R
mkdir ../../../library/grDevices/afm

mv: all.R: set owner/group (was: 501/0): Operation not permitted
mkdir ../../../library/grDevices/enc
mkdir ../../../library/grDevices/icc
making axis_scales.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/axis_scales.c
making chull.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/chull.c
making devices.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/devices.c
making init.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/init.c
making stubs.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/stubs.c
making devCairo.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/devCairo.c
making colors.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/colors.c
making devPicTeX.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/devPicTeX.c
making devPS.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/devPS.c
making devQuartz.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c
making qdBitmap.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/qdBitmap.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/axis_scales.c -o axis_scales.o
making qdPDF.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/qdPDF.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/chull.c -o chull.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/devices.c -o devices.o
making qdCocoa.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/init.c -o init.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/stubs.c -o stubs.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/colors.c -o colors.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/devCairo.c -o devCairo.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/devPicTeX.c -o devPicTeX.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/devPS.c -o devPS.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c -o devQuartz.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/qdBitmap.c -o qdBitmap.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/qdPDF.c -o qdPDF.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2 -fobjc-exceptions  -c ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m -o qdCocoa.o

../../../../../../R-3.6-branch/src/library/grDevices/src/qdBitmap.c:61:39: warning: 'CFURLCreateStringByAddingPercentEscapes' is deprecated: first deprecated in macOS 10.11 - Use [NSString stringByAddingPercentEncodingWithAllowedCharacters:] instead, which always uses the recommended UTF-8 encoding, and which encodes for a specific URL component or subcomponent (since each URL component or subcomponent has different rules for what characters are valid). [-Wdeprecated-declarations]
            CFStringRef pathEscaped = CFURLCreateStringByAddingPercentEscapes(kCFAllocatorDefault, pathString, NULL, NULL, kCFStringEncodingUTF8);
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreFoundation.framework/Headers/CFURL.h:395:13: note: 'CFURLCreateStringByAddingPercentEscapes' has been explicitly marked deprecated here
CFStringRef CFURLCreateStringByAddingPercentEscapes(CFAllocatorRef allocator, CFStringRef originalString, CFStringRef charactersToLeaveUnescaped, CFStringRef legalURLCharactersToBeEscaped, CFStringEncoding encoding) CF_DEPRECATED(10_0, 10_11, 2_0, 9_0, "Use [NSString stringByAddingPercentEncodingWithAllowedCharacters:] instead, which always uses the recommended UTF-8 encoding, and which encodes for a specific URL component or subcomponent (since each URL component or subcomponent has different rules for what characters are valid).");
            ^
../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:646:23: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
            atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:648:27: warning: 'ATSFontFindFromPostScriptName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                atsFont = ATSFontFindFromPostScriptName(cfFontName, kATSOptionFlagsDefault);
                          ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:820:1: note: 'ATSFontFindFromPostScriptName' has been explicitly marked deprecated here
ATSFontFindFromPostScriptName(
^
../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:675:27: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                          ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:676:41: warning: 'ATSFontFindFromPostScriptName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                if (!atsFont) atsFont = ATSFontFindFromPostScriptName(cfFontName, kATSOptionFlagsDefault);
                                        ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:820:1: note: 'ATSFontFindFromPostScriptName' has been explicitly marked deprecated here
ATSFontFindFromPostScriptName(
^
../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:682:35: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                        atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                                  ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:688:39: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                            atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:696:35: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                        atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                                  ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:715:12: warning: 'CGFontCreateWithPlatformFont' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations]
    return CGFontCreateWithPlatformFont(&atsFont);
           ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreGraphics.framework/Headers/CGFont.h:64:32: note: 'CGFontCreateWithPlatformFont' has been explicitly marked deprecated here
CG_EXTERN CGFontRef __nullable CGFontCreateWithPlatformFont(
                               ^
../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:997:5: warning: 'CGContextShowGlyphsWithAdvances' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
    CGContextShowGlyphsWithAdvances(ctx,glyphs, g_adv, len);
    ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreGraphics.framework/Headers/CGContext.h:1066:16: note: 'CGContextShowGlyphsWithAdvances' has been explicitly marked deprecated here
CG_EXTERN void CGContextShowGlyphsWithAdvances(CGContextRef __nullable c,
               ^
1 warning generated.
../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:101:23: warning: sending 'QuartzCocoaView *' to parameter of incompatible type 'id _Nullable'
        [window setDelegate: view];
                             ^~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSWindow.h:317:51: note: passing argument to parameter 'delegate' here
@property (nullable, assign) id delegate;
                                                  ^
../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:85:14: warning: unused variable 'canvasColor' [-Wunused-variable]
    NSColor* canvasColor = nil;
             ^
../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:268:6: warning: 'setRequiredFileType:' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations]
        [sp setRequiredFileType:@"pdf"];
            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:289:1: note: 'setRequiredFileType:' has been explicitly marked deprecated here
- (void)setRequiredFileType:(nullable NSString *)type NS_DEPRECATED_MAC(10_0, 10_6);
^
../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:270:19: warning: 'runModalForDirectory:file:' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations]
        int answer = [sp runModalForDirectory:nil file:@"Rplot.pdf"];
                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:297:1: note: 'runModalForDirectory:file:' has been explicitly marked deprecated here
- (NSInteger)runModalForDirectory:(nullable NSString *)path file:(nullable NSString *)name NS_DEPRECATED_MAC(10_0, 10_6);
^
../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:271:15: warning: 'NSOKButton' is deprecated: first deprecated in macOS 10.10 - Use NSModalResponseOK instead [-Wdeprecated-declarations]
        if(answer == NSOKButton)
                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSPanel.h:85:5: note: 'NSOKButton' has been explicitly marked deprecated here
    NSOKButton NS_ENUM_DEPRECATED_MAC(10_0, 10_10, "Use NSModalResponseOK instead") = 1, // NSModalResponseOK should be used instead (in NSWindow)
    ^
../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:272:29: warning: 'filename' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations]
9                if (![self writeAsPDF:[sp filename]]) NSBeep(); warnings generated
                                          ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:279.
:1: note: 'filename' has been explicitly marked deprecated here
- (NSString *)filename NS_DEPRECATED_MAC(10_0, 10_6);
^
../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:615:13: warning: 'GetFrontProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
        if (GetFrontProcess(&frProc) == noErr) {
            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:434:1: note: 'GetFrontProcess' has been explicitly marked deprecated here
GetFrontProcess(ProcessSerialNumber * PSN)                    AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9;
^
../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:616:17: warning: 'GetCurrentProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
            if (GetCurrentProcess(&myProc) == noErr) {
                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:415:1: note: 'GetCurrentProcess' has been explicitly marked deprecated here
MacGetCurrentProcess(ProcessSerialNumber * PSN)               AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9;
^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:412:34: note: expanded from macro 'MacGetCurrentProcess'
    #define MacGetCurrentProcess GetCurrentProcess
                                 ^
../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:617:21: warning: 'SameProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
                if (SameProcess(&frProc, &myProc, &sameProc) == noErr && !sameProc) {
                    ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:696:1: note: 'SameProcess' has been explicitly marked deprecated here
SameProcess(
^
../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:620:17: warning: 'SetFrontProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
                SetFrontProcess(&myProc);
                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:603:1: note: 'SetFrontProcess' has been explicitly marked deprecated here
SetFrontProcess(const ProcessSerialNumber * PSN)              AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9;
^
10 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o qdBitmap.o qdPDF.o qdCocoa.o -framework AppKit -lz -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/grDevices/libs
making cairoBM.d from ../../../../../../../R-3.6-branch/src/library/grDevices/src/cairo/cairoBM.c
clang -I. -I../../../../../src/include -I../../../../../../../R-3.6-branch/src/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../../../R-3.6-branch/src/modules/X11 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../../../R-3.6-branch/src/library/grDevices/src/cairo/cairoBM.c -o cairoBM.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../../../lib" -L/usr/local/lib -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -L/usr/local/lib -ltiff  -ljpeg -L/opt/X11/lib -lpng16  -L/opt/X11/lib -lz -lcairo -lz -lpixman-1 -lfontconfig -lexpat -lfreetype -lz -lbz2 -lpng16 -lz -lxcb-shm -lX11-xcb -lxcb-render -lXrender -lXext -lX11 -lxcb -lXau -lXdmcp  -L"../../../../../lib" -lR   -Wl,-framework -Wl,CoreFoundation
byte-compiling package 'grDevices'
building package 'graphics'
mkdir ../../../library/graphics
mkdir ../../../library/graphics/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making init.d from ../../../../../../R-3.6-branch/src/library/graphics/src/init.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/graphics/src/init.c -o init.o
making base.d from ../../../../../../R-3.6-branch/src/library/graphics/src/base.c
making graphics.d from ../../../../../../R-3.6-branch/src/library/graphics/src/graphics.c
making par.d from ../../../../../../R-3.6-branch/src/library/graphics/src/par.c
making plot.d from ../../../../../../R-3.6-branch/src/library/graphics/src/plot.c
making stem.d from ../../../../../../R-3.6-branch/src/library/graphics/src/stem.c
making plot3d.d from ../../../../../../R-3.6-branch/src/library/graphics/src/plot3d.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/graphics/src/base.c -o base.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/graphics/src/graphics.c -o graphics.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/graphics/src/par.c -o par.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/graphics/src/plot.c -o plot.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/graphics/src/plot3d.c -o plot3d.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/graphics/src/stem.c -o stem.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/graphics/libs
byte-compiling package 'graphics'
building package 'stats'
mkdir ../../../library/stats
mkdir ../../../library/stats/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making init.d from ../../../../../../R-3.6-branch/src/library/stats/src/init.c
making kmeans.d from ../../../../../../R-3.6-branch/src/library/stats/src/kmeans.c
making bandwidths.d from ../../../../../../R-3.6-branch/src/library/stats/src/bandwidths.c
making ansari.d from ../../../../../../R-3.6-branch/src/library/stats/src/ansari.c
making chisqsim.d from ../../../../../../R-3.6-branch/src/library/stats/src/chisqsim.c
making fexact.d from ../../../../../../R-3.6-branch/src/library/stats/src/fexact.c
making d2x2xk.d from ../../../../../../R-3.6-branch/src/library/stats/src/d2x2xk.c
making kendall.d from ../../../../../../R-3.6-branch/src/library/stats/src/kendall.c
making ks.d from ../../../../../../R-3.6-branch/src/library/stats/src/ks.c
making line.d from ../../../../../../R-3.6-branch/src/library/stats/src/line.c
making smooth.d from ../../../../../../R-3.6-branch/src/library/stats/src/smooth.c
making prho.d from ../../../../../../R-3.6-branch/src/library/stats/src/prho.c
making swilk.d from ../../../../../../R-3.6-branch/src/library/stats/src/swilk.c
making loessc.d from ../../../../../../R-3.6-branch/src/library/stats/src/loessc.c
making ksmooth.d from ../../../../../../R-3.6-branch/src/library/stats/src/ksmooth.c
making monoSpl.d from ../../../../../../R-3.6-branch/src/library/stats/src/monoSpl.c
making isoreg.d from ../../../../../../R-3.6-branch/src/library/stats/src/isoreg.c
making Srunmed.d from ../../../../../../R-3.6-branch/src/library/stats/src/Srunmed.c
making dblcen.d from ../../../../../../R-3.6-branch/src/library/stats/src/dblcen.c
making distance.d from ../../../../../../R-3.6-branch/src/library/stats/src/distance.c
making hclust-utils.d from ../../../../../../R-3.6-branch/src/library/stats/src/hclust-utils.c
making nls.d from ../../../../../../R-3.6-branch/src/library/stats/src/nls.c
making rWishart.d from ../../../../../../R-3.6-branch/src/library/stats/src/rWishart.c
making HoltWinters.d from ../../../../../../R-3.6-branch/src/library/stats/src/HoltWinters.c
making PPsum.d from ../../../../../../R-3.6-branch/src/library/stats/src/PPsum.c
making arima.d from ../../../../../../R-3.6-branch/src/library/stats/src/arima.c
making burg.d from ../../../../../../R-3.6-branch/src/library/stats/src/burg.c
making filter.d from ../../../../../../R-3.6-branch/src/library/stats/src/filter.c
making mAR.d from ../../../../../../R-3.6-branch/src/library/stats/src/mAR.c
making pacf.d from ../../../../../../R-3.6-branch/src/library/stats/src/pacf.c
making starma.d from ../../../../../../R-3.6-branch/src/library/stats/src/starma.c
making port.d from ../../../../../../R-3.6-branch/src/library/stats/src/port.c
making family.d from ../../../../../../R-3.6-branch/src/library/stats/src/family.c
making sbart.d from ../../../../../../R-3.6-branch/src/library/stats/src/sbart.c
making approx.d from ../../../../../../R-3.6-branch/src/library/stats/src/approx.c
making loglin.d from ../../../../../../R-3.6-branch/src/library/stats/src/loglin.c
making lowess.d from ../../../../../../R-3.6-branch/src/library/stats/src/lowess.c
making massdist.d from ../../../../../../R-3.6-branch/src/library/stats/src/massdist.c
making splines.d from ../../../../../../R-3.6-branch/src/library/stats/src/splines.c
making lm.d from ../../../../../../R-3.6-branch/src/library/stats/src/lm.c
making complete_cases.d from ../../../../../../R-3.6-branch/src/library/stats/src/complete_cases.c
making cov.d from ../../../../../../R-3.6-branch/src/library/stats/src/cov.c
making deriv.d from ../../../../../../R-3.6-branch/src/library/stats/src/deriv.c
making fft.d from ../../../../../../R-3.6-branch/src/library/stats/src/fft.c
making fourier.d from ../../../../../../R-3.6-branch/src/library/stats/src/fourier.c
making model.d from ../../../../../../R-3.6-branch/src/library/stats/src/model.c
making optim.d from ../../../../../../R-3.6-branch/src/library/stats/src/optim.c
making optimize.d from ../../../../../../R-3.6-branch/src/library/stats/src/optimize.c
making integrate.d from ../../../../../../R-3.6-branch/src/library/stats/src/integrate.c
making random.d from ../../../../../../R-3.6-branch/src/library/stats/src/random.c
making distn.d from ../../../../../../R-3.6-branch/src/library/stats/src/distn.c
making zeroin.d from ../../../../../../R-3.6-branch/src/library/stats/src/zeroin.c
making rcont.d from ../../../../../../R-3.6-branch/src/library/stats/src/rcont.c
making influence.d from ../../../../../../R-3.6-branch/src/library/stats/src/influence.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/init.c -o init.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/kmeans.c -o kmeans.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/ansari.c -o ansari.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/bandwidths.c -o bandwidths.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/chisqsim.c -o chisqsim.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/d2x2xk.c -o d2x2xk.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/fexact.c -o fexact.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/kendall.c -o kendall.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/ks.c -o ks.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/line.c -o line.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/smooth.c -o smooth.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/prho.c -o prho.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/swilk.c -o swilk.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/ksmooth.c -o ksmooth.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/loessc.c -o loessc.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/monoSpl.c -o monoSpl.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/isoreg.c -o isoreg.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/Srunmed.c -o Srunmed.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/dblcen.c -o dblcen.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/distance.c -o distance.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/hclust-utils.c -o hclust-utils.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/nls.c -o nls.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/rWishart.c -o rWishart.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/HoltWinters.c -o HoltWinters.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/PPsum.c -o PPsum.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/arima.c -o arima.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/burg.c -o burg.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/filter.c -o filter.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/mAR.c -o mAR.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/pacf.c -o pacf.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/starma.c -o starma.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/port.c -o port.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/family.c -o family.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/sbart.c -o sbart.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/approx.c -o approx.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/loglin.c -o loglin.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/lowess.c -o lowess.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/massdist.c -o massdist.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/splines.c -o splines.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/lm.c -o lm.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/complete_cases.c -o complete_cases.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/cov.c -o cov.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/deriv.c -o deriv.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/fft.c -o fft.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/fourier.c -o fourier.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/model.c -o model.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/optim.c -o optim.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/optimize.c -o optimize.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/integrate.c -o integrate.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/random.c -o random.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/distn.c -o distn.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/zeroin.c -o zeroin.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/rcont.c -o rcont.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/influence.c -o influence.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/bsplvd.f -o bsplvd.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/bvalue.f -o bvalue.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/bvalus.f -o bvalus.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f -o loessf.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/ppr.f -o ppr.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/qsbart.f -o qsbart.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/sgram.f -o sgram.o

../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:60:14:

             j=DBLE(j)/2.D0
              1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1894:14:

             m=DBLE(l+u)/2.D0
              1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1399:20:

                   i=phi(pi(ii))
                    1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:928:12:

          lg=DBLE(lg)/2.D0
            1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/sinerp.f -o sinerp.o

../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:523:22:

       if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0
                      1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1205:13:

       ifloor=x
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:835:22:

       if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0
                      1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1583:18:

                i1=dble((d+2)*(d+1))/2.d0
                  1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:473:25:

       subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s)
                         1
Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:473:39:

       subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s)
                                       1
Warning: Unused dummy argument 'nc' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:828:31:

       subroutine ehg197(deg,tau,d,f,dk,trl)
                               1
Warning: Unused dummy argument 'tau' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1985:31:

       subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi)
                               1
Warning: Unused dummy argument 'kappa' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1985:47:

       subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi)
                                               1
Warning: Unused dummy argument 'nv' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1985:53:

       subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi)
                                                     1
Warning: Unused dummy argument 'nvmax' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1498:50:

       subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv)
                                                  1
Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1498:53:

       subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv)
                                                     1
Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1649:30:

       subroutine lowese(iv,liv,lv,wv,m,z,s)
                              1
Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1649:33:

       subroutine lowese(iv,liv,lv,wv,m,z,s)
                                 1
Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1668:39:

       subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s)
                                       1
Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1668:42:

       subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s)
                                          1
Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1700:30:

       subroutine lowesl(iv,liv,lv,wv,m,z,l)
                              1
Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1700:33:

       subroutine lowesl(iv,liv,lv,wv,m,z,l)
                                 1
Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1722:33:

       subroutine lowesr(yy,iv,liv,lv,wv)
                                 1
Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument]
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1722:36:

       subroutine lowesr(yy,iv,liv,lv,wv)
                                    1
Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument]
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/sslvrg.f -o sslvrg.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/stxwx.f -o stxwx.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/hclust.f -o hclust.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/kmns.f -o kmns.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/eureka.f -o eureka.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/stl.f -o stl.o
gfortran -fPIC  -Wall -g -O2 -msse2 -mfpmath=sse -c ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f -o portsrc.o
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/stats/src/lminfl.f -o lminfl.o

../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:6658:0:

          NCOMP = NCOMP + 1
 
Warning: 'ncomp' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:6569:0:

       INTEGER DEG,HEAD,IC,IP,IPL,IPU,IR,JCOL,JP,JPL,JPU,L,MAXINC,
 
Warning: 'jcol' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:5516:0:

       IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK)
 
Warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:5653:0:

               IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310
 
Warning: 'psifac' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:10407:0:

       V(PREDUC) = HALF * (DABS(ALPHAK)*DST*DST + GTSTA)
 
Warning: 'gtsta' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:10324:0:

       IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK)
 
Warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:10319:0:

       LK = DMAX1(LK, PHI*W(PHIPIN))
 
Warning: 'phi' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:10461:0:

       IF (KA .GE. KAMIN) GO TO 340
 
Warning: 'kamin' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:12238:0:

       V(NREDUC) = NRED
 
Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:12241:0:

       V(DST0) = DNWTST
 
Warning: 'dnwtst' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:2510:0:

       V(NREDUC) = NRED
 
Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:2509:0:

  60   V(DST0) = DS0
 
Warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:8169:0:

       V(NREDUC) = NRED
 
Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:8168:0:

  90   V(DST0) = DS0
 
Warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:8647:0:

  210  IV(FDH) = HES
 
Warning: 'hes' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:3582:0:

       IF (LIV .LT. MIV2) GO TO 300
 
Warning: 'miv2' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:12074:0:

  270  CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X)
 
Warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:12031:0:

       CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1))
 
Warning: 'rmat1' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:12031:0: Warning: 'qtr1' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:453:0:

  300  CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X)
 
Warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:361:0:

       CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1))
 
Warning: 'rmat1' may be used uninitialized in this function [-Wmaybe-uninitialized]
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:361:0: Warning: 'qtr1' may be used uninitialized in this function [-Wmaybe-uninitialized]
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -L../../../../lib -lRlapack -L../../../../lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation

ld: warning: could not create compact unwind for _ehg136_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _ehg139_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _splineaa_: stack subq instruction is too different from dwarf stack size
mkdir ../../../../library/stats/libs
byte-compiling package 'stats'
building package 'datasets'
mkdir ../../../library/datasets
mkdir ../../../library/datasets/data
building package 'methods'
mkdir ../../../library/methods
mkdir ../../../library/methods/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making do_substitute_direct.d from ../../../../../../R-3.6-branch/src/library/methods/src/do_substitute_direct.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/methods/src/do_substitute_direct.c -o do_substitute_direct.o
making init.d from ../../../../../../R-3.6-branch/src/library/methods/src/init.c
making methods_list_dispatch.d from ../../../../../../R-3.6-branch/src/library/methods/src/methods_list_dispatch.c
making slot.d from ../../../../../../R-3.6-branch/src/library/methods/src/slot.c
making class_support.d from ../../../../../../R-3.6-branch/src/library/methods/src/class_support.c
making tests.d from ../../../../../../R-3.6-branch/src/library/methods/src/tests.c
making utils.d from ../../../../../../R-3.6-branch/src/library/methods/src/utils.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/methods/src/init.c -o init.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/methods/src/methods_list_dispatch.c -o methods_list_dispatch.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/methods/src/slot.c -o slot.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/methods/src/class_support.c -o class_support.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/methods/src/tests.c -o tests.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/methods/src/utils.c -o utils.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/methods/libs
byte-compiling 'methods'
initializing class and method definitions ... done
building package 'grid'
mkdir ../../../library/grid
mkdir ../../../library/grid/doc
mkdir ../../../library/grid/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making gpar.d from ../../../../../../R-3.6-branch/src/library/grid/src/gpar.c
making grid.d from ../../../../../../R-3.6-branch/src/library/grid/src/grid.c
making just.d from ../../../../../../R-3.6-branch/src/library/grid/src/just.c
making layout.d from ../../../../../../R-3.6-branch/src/library/grid/src/layout.c
making register.d from ../../../../../../R-3.6-branch/src/library/grid/src/register.c
making matrix.d from ../../../../../../R-3.6-branch/src/library/grid/src/matrix.c
making state.d from ../../../../../../R-3.6-branch/src/library/grid/src/state.c
making unit.d from ../../../../../../R-3.6-branch/src/library/grid/src/unit.c
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grid/src/gpar.c -o gpar.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grid/src/grid.c -o grid.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grid/src/just.c -o just.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grid/src/layout.c -o layout.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grid/src/matrix.c -o matrix.o
making util.d from ../../../../../../R-3.6-branch/src/library/grid/src/util.c
making viewport.d from ../../../../../../R-3.6-branch/src/library/grid/src/viewport.c
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grid/src/register.c -o register.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grid/src/state.c -o state.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grid/src/unit.c -o unit.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grid/src/util.c -o util.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/grid/src/viewport.c -o viewport.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/grid/libs
byte-compiling package 'grid'
building package 'splines'
mkdir ../../../library/splines
mkdir ../../../library/splines/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/splines/src/splines.c -o splines.o
making splines.d from ../../../../../../R-3.6-branch/src/library/splines/src/splines.c
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o splines.so splines.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/splines/libs
byte-compiling package 'splines'
building package 'stats4'
mkdir ../../../library/stats4
mkdir ../../../library/stats4/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
byte-compiling package 'stats4'
building package 'tcltk'
mkdir ../../../library/tcltk
mkdir ../../../library/tcltk/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
mkdir ../../../library/tcltk/exec
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/opt/X11/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tcltk/src/init.c -o init.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/opt/X11/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tcltk/src/tcltk.c -o tcltk.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/opt/X11/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/tcltk/src/tcltk_unix.c -o tcltk_unix.o
making init.d from ../../../../../../R-3.6-branch/src/library/tcltk/src/init.c
making tcltk_unix.d from ../../../../../../R-3.6-branch/src/library/tcltk/src/tcltk_unix.c
making tcltk.d from ../../../../../../R-3.6-branch/src/library/tcltk/src/tcltk.c
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/local/lib -ltcl8.6 -L/usr/local/lib -ltk8.6 -L/opt/X11/lib -lX11 -Wl,-weak-lXss -lXext -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/tcltk/libs
byte-compiling package 'tcltk'
building package 'parallel'
mkdir ../../../library/parallel
mkdir ../../../library/parallel/doc
mkdir ../../../library/parallel/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/parallel/src/init.c -o init.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/parallel/src/rngstream.c -o rngstream.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.6-branch/src/library/parallel/src/fork.c -o fork.o
making init.d from ../../../../../../R-3.6-branch/src/library/parallel/src/init.c
making rngstream.d from ../../../../../../R-3.6-branch/src/library/parallel/src/rngstream.c
making fork.d from ../../../../../../R-3.6-branch/src/library/parallel/src/fork.c
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/parallel/libs
byte-compiling package 'parallel'
installing parsed NAMESPACE files
make[1]: Nothing to be done for `R'.
you should 'make docs' now ...
configuring Java ...
Java interpreter : /usr/bin/java
Java version     : 11.0.1
Java home path   : /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home
Java compiler    : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/darwin
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I/Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/include/darwin  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c conftest.c -o conftest.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o conftest.so conftest.o -L/Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server -ljvm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation


JAVA_HOME        : /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home
Java library path: $(JAVA_HOME)/lib/server
JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/darwin
JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Updating Java configuration in /Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch
Done.

creating doc/NEWS
creating doc/NEWS.pdf
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
mkdir ../../doc/manual/images
creating doc/manual/R-data.html
creating doc/manual/R-admin.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
installing parsed Rd
  grid
  datasets
  grDevices
  tcltk
  splines
  graphics
  stats4
  compiler
  methods
  tools
  parallel
  utils
  stats
  base
building/updating package metadata ...
writing package indices
begin installing recommended package MASS
begin installing recommended package lattice
begin installing recommended package codetools
begin installing recommended package KernSmooth
begin installing recommended package rpart
begin installing recommended package foreign
begin installing recommended package nnet
begin installing recommended package spatial
* installing *source* package 'codetools' ...
** package 'codetools' successfully unpacked and MD5 sums checked
** using non-staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (codetools)
* installing *source* package 'nnet' ...
** package 'nnet' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c nnet.c -o nnet.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o nnet.so nnet.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/nnet/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (nnet)
* installing *source* package 'spatial' ...
** package 'spatial' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c krc.c -o krc.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c pps.c -o pps.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o spatial.so init.o krc.o pps.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/spatial/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (spatial)
* installing *source* package 'KernSmooth' ...
** package 'KernSmooth' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
gfortran  -fPIC  -Wall -g -O2  -c blkest.f -o blkest.o
gfortran  -fPIC  -Wall -g -O2  -c cp.f -o cp.o
gfortran  -fPIC  -Wall -g -O2  -c dgedi.f -o dgedi.o
gfortran  -fPIC  -Wall -g -O2  -c dgefa.f -o dgefa.o
gfortran  -fPIC  -Wall -g -O2  -c dgesl.f -o dgesl.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c init.c -o init.o
gfortran  -fPIC  -Wall -g -O2  -c linbin.f -o linbin.o
gfortran  -fPIC  -Wall -g -O2  -c linbin2D.f -o linbin2D.o
gfortran  -fPIC  -Wall -g -O2  -c locpoly.f -o locpoly.o
gfortran  -fPIC  -Wall -g -O2  -c rlbin.f -o rlbin.o
gfortran  -fPIC  -Wall -g -O2  -c sdiag.f -o sdiag.o
gfortran  -fPIC  -Wall -g -O2  -c sstdiag.f -o sstdiag.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/KernSmooth/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KernSmooth)
* installing *source* package 'foreign' ...
** package 'foreign' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c R_systat.c -o R_systat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c Rdbfread.c -o Rdbfread.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c Rdbfwrite.c -o Rdbfwrite.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c SASxport.c -o SASxport.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c avl.c -o avl.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dbfopen.c -o dbfopen.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c file-handle.c -o file-handle.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c format.c -o format.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c minitab.c -o minitab.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c pfm-read.c -o pfm-read.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c sfm-read.c -o sfm-read.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c spss.c -o spss.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c stataread.c -o stataread.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/foreign/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (foreign)
* installing *source* package 'rpart' ...
** package 'rpart' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c anova.c -o anova.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c anovapred.c -o anovapred.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c branch.c -o branch.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c bsplit.c -o bsplit.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c choose_surg.c -o choose_surg.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c fix_cp.c -o fix_cp.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c free_tree.c -o free_tree.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c gini.c -o gini.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c graycode.c -o graycode.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c insert_split.c -o insert_split.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c make_cp_list.c -o make_cp_list.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c make_cp_table.c -o make_cp_table.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c mysort.c -o mysort.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c nodesplit.c -o nodesplit.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c partition.c -o partition.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c poisson.c -o poisson.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c pred_rpart.c -o pred_rpart.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c print_tree.c -o print_tree.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c rpart.c -o rpart.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c rpart_callback.c -o rpart_callback.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c rpartexp.c -o rpartexp.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c rpartexp2.c -o rpartexp2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c rpcountup.c -o rpcountup.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c rpmatrix.c -o rpmatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c rundown.c -o rundown.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c rundown2.c -o rundown2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c surrogate.c -o surrogate.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c usersplit.c -o usersplit.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c xpred.c -o xpred.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c xval.c -o xval.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/rpart/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rpart)
* installing *source* package 'MASS' ...
** package 'MASS' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c MASS.c -o MASS.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c lqs.c -o lqs.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o MASS.so MASS.o lqs.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/MASS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (MASS)
begin installing recommended package class
begin installing recommended package cluster
* installing *source* package 'lattice' ...
** package 'lattice' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c threeDplot.c -o threeDplot.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o lattice.so init.o threeDplot.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/lattice/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (lattice)
begin installing recommended package nlme
begin installing recommended package Matrix
* installing *source* package 'class' ...
** package 'class' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c class.c -o class.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o class.so class.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/class/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (class)
* installing *source* package 'cluster' ...
** package 'cluster' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c clara.c -o clara.o
gfortran  -fPIC  -Wall -g -O2  -c daisy.f -o daisy.o
gfortran  -fPIC  -Wall -g -O2  -c dysta.f -o dysta.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c fanny.c -o fanny.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c mona.c -o mona.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c pam.c -o pam.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c sildist.c -o sildist.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c spannel.c -o spannel.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c twins.c -o twins.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/cluster/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (cluster)
* installing *source* package 'nlme' ...
** package 'nlme' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
gfortran  -fPIC  -Wall -g -O2  -c chol.f -o chol.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c corStruct.c -o corStruct.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c gnls.c -o gnls.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c matrix.c -o matrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c nlOptimizer.c -o nlOptimizer.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c nlme.c -o nlme.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c nlmefit.c -o nlmefit.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c pdMat.c -o pdMat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c pythag.c -o pythag.o
gfortran  -fPIC  -Wall -g -O2  -c rs.f -o rs.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/nlme/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (nlme)
* installing *source* package 'Matrix' ...
** package 'Matrix' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c CHMfactor.c -o CHMfactor.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c Csparse.c -o Csparse.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c TMatrix_as.c -o TMatrix_as.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c Tsparse.c -o Tsparse.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c Mutils.c -o Mutils.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c chm_common.c -o chm_common.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c cs.c -o cs.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c cs_utils.c -o cs_utils.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dense.c -o dense.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dgCMatrix.c -o dgCMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dgTMatrix.c -o dgTMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dgeMatrix.c -o dgeMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dpoMatrix.c -o dpoMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dppMatrix.c -o dppMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dsCMatrix.c -o dsCMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dsyMatrix.c -o dsyMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dspMatrix.c -o dspMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dtCMatrix.c -o dtCMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dtTMatrix.c -o dtTMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dtrMatrix.c -o dtrMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c dtpMatrix.c -o dtpMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c factorizations.c -o factorizations.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ldense.c -o ldense.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c lgCMatrix.c -o lgCMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c sparseQR.c -o sparseQR.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c abIndex.c -o abIndex.o
( cd Lib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean )
( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean )
( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean )
( cd Lib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -f "/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/etc/Makeconf" -f Makefile )
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_aat.c -o cholmod_aat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_add.c -o cholmod_add.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_band.c -o cholmod_band.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_common.c -o cholmod_common.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_complex.c -o cholmod_complex.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_copy.c -o cholmod_copy.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_dense.c -o cholmod_dense.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_error.c -o cholmod_error.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_factor.c -o cholmod_factor.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_memory.c -o cholmod_memory.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_sparse.c -o cholmod_sparse.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_transpose.c -o cholmod_transpose.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_triplet.c -o cholmod_triplet.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Core/cholmod_version.c -o cholmod_version.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Check/cholmod_check.c -o cholmod_check.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Check/cholmod_read.c -o cholmod_read.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Check/cholmod_write.c -o cholmod_write.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Modify/cholmod_updown.c -o cholmod_updown.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_aat.c -o cholmod_l_aat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_add.c -o cholmod_l_add.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_band.c -o cholmod_l_band.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_common.c -o cholmod_l_common.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_complex.c -o cholmod_l_complex.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_copy.c -o cholmod_l_copy.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_dense.c -o cholmod_l_dense.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_error.c -o cholmod_l_error.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_factor.c -o cholmod_l_factor.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_memory.c -o cholmod_l_memory.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_sparse.c -o cholmod_l_sparse.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_transpose.c -o cholmod_l_transpose.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_triplet.c -o cholmod_l_triplet.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_version.c -o cholmod_l_version.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Check/cholmod_check.c -o cholmod_l_check.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Check/cholmod_read.c -o cholmod_l_read.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Check/cholmod_write.c -o cholmod_l_write.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_updown.c -o cholmod_l_updown.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o
ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o  cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o 
( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -f "/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/etc/Makeconf" -f Makefile lib )
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c colamd_global.c -o colamd_global.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c colamd.c -o colamd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c colamd.c -o colamd_l.o
ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o
( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -f "/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/etc/Makeconf" -f Makefile lib )
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_1.c -o amd_i_1.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_1.c -o amd_l_1.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_2.c -o amd_i_2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_2.c -o amd_l_2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_order.c -o amd_i_order.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_order.c -o amd_l_order.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_control.c -o amd_i_control.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_control.c -o amd_l_control.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_info.c -o amd_i_info.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_info.c -o amd_l_info.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_global.c -o amd_i_global.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_global.c -o amd_l_global.o
ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o 
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../../AMD.a(amd_i_dump.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../../AMD.a(amd_l_dump.o) has no symbols
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c SuiteSparse_config.c -o SuiteSparse_config.o
ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lRlapack -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/Matrix/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'chol2inv' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix'
Creating a generic function for 'diag' from package 'base' in package 'Matrix'
Creating a generic function for 'drop' from package 'base' in package 'Matrix'
Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix'
Creating a generic function for 'unname' from package 'base' in package 'Matrix'
Creating a generic function for 'norm' from package 'base' in package 'Matrix'
Creating a generic function for 'rcond' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'rcond' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc"
Creating a generic function for 'colSums' from package 'base' in package 'Matrix'
Creating a generic function for 'colMeans' from package 'base' in package 'Matrix'
Creating a generic function for 'rowSums' from package 'base' in package 'Matrix'
Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix'
in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix'
Creating a generic function for 'diag<-' from package 'base' in package 'Matrix'
Creating a generic function for 'crossprod' from package 'base' in package 'Matrix'
Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix'
Creating a generic function for 'which' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM"
in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph"
in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph"
in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL"
in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL"
Creating a generic function for 'qr.R' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix'
Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Matrix)
begin installing recommended package mgcv
begin installing recommended package survival
* installing *source* package 'survival' ...
** package 'survival' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c agexact.c -o agexact.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c agfit4.c -o agfit4.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c agfit5.c -o agfit5.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c agmart.c -o agmart.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c agmart3.c -o agmart3.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c agscore2.c -o agscore2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c agsurv3.c -o agsurv3.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c agsurv4.c -o agsurv4.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c agsurv5.c -o agsurv5.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c chinv2.c -o chinv2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c chinv3.c -o chinv3.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c cholesky2.c -o cholesky2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c cholesky3.c -o cholesky3.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c cholesky5.c -o cholesky5.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c chsolve2.c -o chsolve2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c chsolve3.c -o chsolve3.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c chsolve5.c -o chsolve5.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c concordance1.c -o concordance1.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c concordance3.c -o concordance3.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c cox_Rcallback.c -o cox_Rcallback.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c coxcount1.c -o coxcount1.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c coxdetail.c -o coxdetail.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c coxexact.c -o coxexact.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c coxfit5.c -o coxfit5.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c coxfit6.c -o coxfit6.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c coxmart.c -o coxmart.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c coxmart2.c -o coxmart2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c coxph_wtest.c -o coxph_wtest.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c coxsafe.c -o coxsafe.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c coxscho.c -o coxscho.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c coxscore2.c -o coxscore2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c coxsurv1.c -o coxsurv1.o
coxsurv1.c:150:13: warning: variables 'i' and 'nvar' used in loop condition not modified in loop body [-Wfor-loop-analysis]
                for (k=0; i
processing 'displaylist.Rnw'
processing 'frame.Rnw'
processing 'grid.Rnw'
processing 'grobs.Rnw'
processing 'interactive.Rnw'
processing 'locndimn.Rnw'
processing 'moveline.Rnw'
processing 'nonfinite.Rnw'
processing 'plotexample.Rnw'
processing 'rotated.Rnw'
processing 'saveload.Rnw'
processing 'sharing.Rnw'
processing 'viewports.Rnw'
building/updating vignettes for package 'parallel' ...

processing 'parallel.Rnw'
building/updating vignettes for package 'utils' ...

processing 'Sweave.Rnw'

[[system return code 0x0]]